Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11612 | 3' | -63.1 | NC_003085.1 | + | 43255 | 1.09 | 0.000176 |
Target: 5'- gUCCCCGCCCUCGGACUCCACGCGCAGg -3' miRNA: 3'- -AGGGGCGGGAGCCUGAGGUGCGCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 5810 | 0.73 | 0.096825 |
Target: 5'- aCCCCGCCCccCGGGCUgCugGagGCGGa -3' miRNA: 3'- aGGGGCGGGa-GCCUGAgGugCg-CGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 20053 | 0.73 | 0.099214 |
Target: 5'- gCCCgCGCCCUCcuggagcgGGACauccgcuUCCACGCGCGc -3' miRNA: 3'- aGGG-GCGGGAG--------CCUG-------AGGUGCGCGUc -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 30410 | 0.71 | 0.144637 |
Target: 5'- gCUCCGCCgCgcgccgCGGAauCUCCACGaCGCAGc -3' miRNA: 3'- aGGGGCGG-Ga-----GCCU--GAGGUGC-GCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 36852 | 0.71 | 0.148496 |
Target: 5'- aUCCagCGCCCg-GGGCgCCACGCGCGu -3' miRNA: 3'- -AGGg-GCGGGagCCUGaGGUGCGCGUc -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 12884 | 0.7 | 0.156495 |
Target: 5'- -gCCCGCCCUCGaagcCUCC-CGUGCAa -3' miRNA: 3'- agGGGCGGGAGCcu--GAGGuGCGCGUc -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 31334 | 0.7 | 0.158141 |
Target: 5'- aCCuuGUCCgcgCGGACguaccgguaggccgCCAUGCGCAGc -3' miRNA: 3'- aGGggCGGGa--GCCUGa-------------GGUGCGCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 39305 | 0.7 | 0.182875 |
Target: 5'- gCCCgGUCCUcgCGGuACUCCccgcCGCGCAGu -3' miRNA: 3'- aGGGgCGGGA--GCC-UGAGGu---GCGCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 31008 | 0.69 | 0.192508 |
Target: 5'- gUCCaCgCGCuCCUCcaGGACgUCCACGaCGCGGg -3' miRNA: 3'- -AGG-G-GCG-GGAG--CCUG-AGGUGC-GCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 24980 | 0.69 | 0.20779 |
Target: 5'- aUCCUGCCgcagaacauCUCGGACacgUCCGCgGUGCAGa -3' miRNA: 3'- aGGGGCGG---------GAGCCUG---AGGUG-CGCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 39718 | 0.68 | 0.224108 |
Target: 5'- uUCCaagcgCGCCCU-GGACUCCAUGaCGCc- -3' miRNA: 3'- -AGGg----GCGGGAgCCUGAGGUGC-GCGuc -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 25239 | 0.68 | 0.235582 |
Target: 5'- gCgCCGCCCU-GGugcGCUCCGCG-GCGGg -3' miRNA: 3'- aGgGGCGGGAgCC---UGAGGUGCgCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 8790 | 0.68 | 0.241502 |
Target: 5'- cCCCUGCgCCggCGG-CUCCGCgagguugcgcgGCGCAGc -3' miRNA: 3'- aGGGGCG-GGa-GCCuGAGGUG-----------CGCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 28511 | 0.68 | 0.241502 |
Target: 5'- gCCaCCGCaCCUCGuGCcagaCGCGCGCGGg -3' miRNA: 3'- aGG-GGCG-GGAGCcUGag--GUGCGCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 21704 | 0.67 | 0.260007 |
Target: 5'- -gCCCGCuucgCCUCGGACaUCCA-GCGCc- -3' miRNA: 3'- agGGGCG----GGAGCCUG-AGGUgCGCGuc -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 17243 | 0.67 | 0.266427 |
Target: 5'- gCCCCGUgCUCuGGGCggUguUGCGCAGg -3' miRNA: 3'- aGGGGCGgGAG-CCUGa-GguGCGCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 23672 | 0.67 | 0.269031 |
Target: 5'- aCgCCGCCCaggcguccacgcagCGGGC-CCGCGCaGCAGc -3' miRNA: 3'- aGgGGCGGGa-------------GCCUGaGGUGCG-CGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 21830 | 0.67 | 0.286458 |
Target: 5'- gUCCCGCUggCGGcgagccccccagGCUCCAcacacCGCGCAGg -3' miRNA: 3'- aGGGGCGGgaGCC------------UGAGGU-----GCGCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 4120 | 0.67 | 0.286458 |
Target: 5'- gCgCCGCgCUgGGACUCCA-GCGCc- -3' miRNA: 3'- aGgGGCGgGAgCCUGAGGUgCGCGuc -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 10124 | 0.67 | 0.286458 |
Target: 5'- -aCCUGCUCgcagCGGACUaCCGCgaacuGCGCGGc -3' miRNA: 3'- agGGGCGGGa---GCCUGA-GGUG-----CGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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