Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11612 | 3' | -63.1 | NC_003085.1 | + | 27412 | 0.66 | 0.337753 |
Target: 5'- -aCCUGCCCgCGGGCgcaaucgCCGguacaGCGCAGc -3' miRNA: 3'- agGGGCGGGaGCCUGa------GGUg----CGCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 28511 | 0.68 | 0.241502 |
Target: 5'- gCCaCCGCaCCUCGuGCcagaCGCGCGCGGg -3' miRNA: 3'- aGG-GGCG-GGAGCcUGag--GUGCGCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 29367 | 0.66 | 0.314984 |
Target: 5'- gCCCCGCCaccugCGGcACgUCacaGCGCGCGu -3' miRNA: 3'- aGGGGCGGga---GCC-UG-AGg--UGCGCGUc -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 30410 | 0.71 | 0.144637 |
Target: 5'- gCUCCGCCgCgcgccgCGGAauCUCCACGaCGCAGc -3' miRNA: 3'- aGGGGCGG-Ga-----GCCU--GAGGUGC-GCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 31008 | 0.69 | 0.192508 |
Target: 5'- gUCCaCgCGCuCCUCcaGGACgUCCACGaCGCGGg -3' miRNA: 3'- -AGG-G-GCG-GGAG--CCUG-AGGUGC-GCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 31334 | 0.7 | 0.158141 |
Target: 5'- aCCuuGUCCgcgCGGACguaccgguaggccgCCAUGCGCAGc -3' miRNA: 3'- aGGggCGGGa--GCCUGa-------------GGUGCGCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 36852 | 0.71 | 0.148496 |
Target: 5'- aUCCagCGCCCg-GGGCgCCACGCGCGu -3' miRNA: 3'- -AGGg-GCGGGagCCUGaGGUGCGCGUc -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 37877 | 0.67 | 0.293393 |
Target: 5'- gCCCUGCCC-CGuuCcagCCAgGCGCGGg -3' miRNA: 3'- aGGGGCGGGaGCcuGa--GGUgCGCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 39305 | 0.7 | 0.182875 |
Target: 5'- gCCCgGUCCUcgCGGuACUCCccgcCGCGCAGu -3' miRNA: 3'- aGGGgCGGGA--GCC-UGAGGu---GCGCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 39718 | 0.68 | 0.224108 |
Target: 5'- uUCCaagcgCGCCCU-GGACUCCAUGaCGCc- -3' miRNA: 3'- -AGGg----GCGGGAgCCUGAGGUGC-GCGuc -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 40112 | 0.67 | 0.293393 |
Target: 5'- cCCCCGaCCUCGGcugcugguccugGCcgCCGCGCGUc- -3' miRNA: 3'- aGGGGCgGGAGCC------------UGa-GGUGCGCGuc -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 42539 | 0.66 | 0.337753 |
Target: 5'- cUCCCGCuucgCCUCGGcCa--GCGCGCGGg -3' miRNA: 3'- aGGGGCG----GGAGCCuGaggUGCGCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 43255 | 1.09 | 0.000176 |
Target: 5'- gUCCCCGCCCUCGGACUCCACGCGCAGg -3' miRNA: 3'- -AGGGGCGGGAGCCUGAGGUGCGCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 43348 | 0.66 | 0.300459 |
Target: 5'- cUCCCCGCCCuUCGcGGCgucguaggCgGCaaGCAGg -3' miRNA: 3'- -AGGGGCGGG-AGC-CUGa-------GgUGcgCGUC- -5' |
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11612 | 3' | -63.1 | NC_003085.1 | + | 44191 | 0.66 | 0.307656 |
Target: 5'- uUCgCCCGUgCUCGcGuACUgCCGCGCGCc- -3' miRNA: 3'- -AG-GGGCGgGAGC-C-UGA-GGUGCGCGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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