miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11614 3' -59.5 NC_003085.1 + 16670 0.66 0.450912
Target:  5'- cGGGcGCUGcCUGUCgaccUGCUACacgcaGGGCGgGg -3'
miRNA:   3'- -CCC-CGACaGACAG----ACGGUG-----UCCGCgU- -5'
11614 3' -59.5 NC_003085.1 + 8163 0.66 0.441232
Target:  5'- uGGGCgugagGUC-GUCgaagaGCCGCuGGGCGCu -3'
miRNA:   3'- cCCCGa----CAGaCAGa----CGGUG-UCCGCGu -5'
11614 3' -59.5 NC_003085.1 + 11681 0.67 0.385753
Target:  5'- uGGGGCUGUgaG-UUGCCGCuaccaguucauGGGCGa- -3'
miRNA:   3'- -CCCCGACAgaCaGACGGUG-----------UCCGCgu -5'
11614 3' -59.5 NC_003085.1 + 35264 0.67 0.363185
Target:  5'- cGGGCUuGUCgcagcccggacgCUGgCACAGGUGCAu -3'
miRNA:   3'- cCCCGA-CAGaca---------GACgGUGUCCGCGU- -5'
11614 3' -59.5 NC_003085.1 + 10737 0.67 0.359795
Target:  5'- cGGacGCUGUugCUGUCcgGCCACacGGGCGCc -3'
miRNA:   3'- cCC--CGACA--GACAGa-CGGUG--UCCGCGu -5'
11614 3' -59.5 NC_003085.1 + 43510 0.67 0.359795
Target:  5'- aGGGGUgGaCUGgcaUCUGCCGC-GGCGUg -3'
miRNA:   3'- -CCCCGaCaGAC---AGACGGUGuCCGCGu -5'
11614 3' -59.5 NC_003085.1 + 12031 0.68 0.319308
Target:  5'- cGGGGUUGgcgCUcgCUaGCCGCAcuGGCGCAu -3'
miRNA:   3'- -CCCCGACa--GAcaGA-CGGUGU--CCGCGU- -5'
11614 3' -59.5 NC_003085.1 + 4835 0.68 0.311632
Target:  5'- uGGGgUGUCaGUCUGCCguguuaccugACAgGGCGUAc -3'
miRNA:   3'- cCCCgACAGaCAGACGG----------UGU-CCGCGU- -5'
11614 3' -59.5 NC_003085.1 + 42696 0.69 0.296704
Target:  5'- aGGGCUcUCgccGUCcGCCAC-GGCGCGg -3'
miRNA:   3'- cCCCGAcAGa--CAGaCGGUGuCCGCGU- -5'
11614 3' -59.5 NC_003085.1 + 11618 0.7 0.248841
Target:  5'- aGGGGCUGUgCaGgggCUGCUAcCAGcGCGCGc -3'
miRNA:   3'- -CCCCGACA-GaCa--GACGGU-GUC-CGCGU- -5'
11614 3' -59.5 NC_003085.1 + 20114 0.7 0.242549
Target:  5'- cGGGGCUGga-GUCcgGCCuAgAGGCGCu -3'
miRNA:   3'- -CCCCGACagaCAGa-CGG-UgUCCGCGu -5'
11614 3' -59.5 NC_003085.1 + 17843 0.71 0.202149
Target:  5'- uGGGGCaGUgCUGg-UGcCCGCAGGCGCc -3'
miRNA:   3'- -CCCCGaCA-GACagAC-GGUGUCCGCGu -5'
11614 3' -59.5 NC_003085.1 + 45879 1.1 0.00025
Target:  5'- uGGGGCUGUCUGUCUGCCACAGGCGCAg -3'
miRNA:   3'- -CCCCGACAGACAGACGGUGUCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.