miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11614 5' -60.1 NC_003085.1 + 38791 0.66 0.400741
Target:  5'- gGUGUGUCCAGcacgccGGCAGCCccGAGg -3'
miRNA:   3'- aCACGCGGGUCucu---CCGUCGGu-CUCa -5'
11614 5' -60.1 NC_003085.1 + 11946 0.66 0.400741
Target:  5'- gGUcGcCGCCUgggcgugaaGGAGGGGCGGCguGAGc -3'
miRNA:   3'- aCA-C-GCGGG---------UCUCUCCGUCGguCUCa -5'
11614 5' -60.1 NC_003085.1 + 49058 0.66 0.399829
Target:  5'- cUG-GCGUCCAGGGAGcGCAggcgcuuGCCguAGAGg -3'
miRNA:   3'- -ACaCGCGGGUCUCUC-CGU-------CGG--UCUCa -5'
11614 5' -60.1 NC_003085.1 + 1603 0.66 0.391684
Target:  5'- cGUGUGCaugaGGAGAcgcacGGCAGCCacacAGAGg -3'
miRNA:   3'- aCACGCGgg--UCUCU-----CCGUCGG----UCUCa -5'
11614 5' -60.1 NC_003085.1 + 22606 0.66 0.382762
Target:  5'- gGUGCGCCUccuGAaucGAGGguGgCGGGGg -3'
miRNA:   3'- aCACGCGGGu--CU---CUCCguCgGUCUCa -5'
11614 5' -60.1 NC_003085.1 + 38601 0.66 0.373977
Target:  5'- -cUGCGUCCAGcGcAGGaagaGGCCGGAGc -3'
miRNA:   3'- acACGCGGGUCuC-UCCg---UCGGUCUCa -5'
11614 5' -60.1 NC_003085.1 + 8839 0.67 0.35682
Target:  5'- -cUGCGCgagcaGGAGGGGCGGCCAuGAcGUg -3'
miRNA:   3'- acACGCGgg---UCUCUCCGUCGGU-CU-CA- -5'
11614 5' -60.1 NC_003085.1 + 3954 0.67 0.340223
Target:  5'- uUGUcGCgGCCCGGGGAuGG-AGCCAGAc- -3'
miRNA:   3'- -ACA-CG-CGGGUCUCU-CCgUCGGUCUca -5'
11614 5' -60.1 NC_003085.1 + 5817 0.67 0.332137
Target:  5'- gGUGCGCaUCGGGGAGGC-GUCAGc-- -3'
miRNA:   3'- aCACGCG-GGUCUCUCCGuCGGUCuca -5'
11614 5' -60.1 NC_003085.1 + 26399 0.67 0.332137
Target:  5'- --aGCGCCCAGGGcuGGCAGuugcuCCAG-GUg -3'
miRNA:   3'- acaCGCGGGUCUCu-CCGUC-----GGUCuCA- -5'
11614 5' -60.1 NC_003085.1 + 31600 0.67 0.332137
Target:  5'- uUGUGCaGCCCcaGGAGGCaccGGCCGcGGGg -3'
miRNA:   3'- -ACACG-CGGGucUCUCCG---UCGGU-CUCa -5'
11614 5' -60.1 NC_003085.1 + 19352 0.68 0.301215
Target:  5'- aUG-GCGUCCguguAGAgGAGGCGGCCGGcGUc -3'
miRNA:   3'- -ACaCGCGGG----UCU-CUCCGUCGGUCuCA- -5'
11614 5' -60.1 NC_003085.1 + 30419 0.68 0.279514
Target:  5'- --cGCGCCgCGGAaucuccacGAcGCAGCCAGAGg -3'
miRNA:   3'- acaCGCGG-GUCU--------CUcCGUCGGUCUCa -5'
11614 5' -60.1 NC_003085.1 + 14974 0.69 0.259075
Target:  5'- cGUgGUGCCCuGGGAGGCGccCCAGGGc -3'
miRNA:   3'- aCA-CGCGGGuCUCUCCGUc-GGUCUCa -5'
11614 5' -60.1 NC_003085.1 + 3541 0.69 0.259075
Target:  5'- aGUGCGCCCcuuGGAccacgcucaAGGCGGCCGGGc- -3'
miRNA:   3'- aCACGCGGG---UCUc--------UCCGUCGGUCUca -5'
11614 5' -60.1 NC_003085.1 + 36461 0.7 0.199676
Target:  5'- gGUGUGCUgCGGgguagguguuGGAGGUAGCCAGGGc -3'
miRNA:   3'- aCACGCGG-GUC----------UCUCCGUCGGUCUCa -5'
11614 5' -60.1 NC_003085.1 + 12716 0.71 0.189319
Target:  5'- gGUGCGCUgGGAGuaccGGCaagaaaaggGGCCGGAGg -3'
miRNA:   3'- aCACGCGGgUCUCu---CCG---------UCGGUCUCa -5'
11614 5' -60.1 NC_003085.1 + 23022 0.71 0.178956
Target:  5'- cUG-GCGCCCAGAGguucgcgagcaguGGGCGaagcugccGCCGGAGg -3'
miRNA:   3'- -ACaCGCGGGUCUC-------------UCCGU--------CGGUCUCa -5'
11614 5' -60.1 NC_003085.1 + 10635 0.71 0.17467
Target:  5'- cUGUGUgggGCgCCGGcAGAGGCAGCCAaAGUc -3'
miRNA:   3'- -ACACG---CG-GGUC-UCUCCGUCGGUcUCA- -5'
11614 5' -60.1 NC_003085.1 + 22898 0.72 0.148375
Target:  5'- gGUGCGaCuCCGGcGGAGGCuGCCGGGGc -3'
miRNA:   3'- aCACGC-G-GGUC-UCUCCGuCGGUCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.