miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11615 5' -56.8 NC_003085.1 + 7514 0.68 0.500872
Target:  5'- uGCGucuCGGUGGCGGcaaguggGGCCAUG-CCg- -3'
miRNA:   3'- -CGCu--GCUACUGCCa------CCGGUGCaGGaa -5'
11615 5' -56.8 NC_003085.1 + 25166 0.68 0.49058
Target:  5'- gGCGACcguggccuGGUGGCGGUGGCgAUGagcgCCa- -3'
miRNA:   3'- -CGCUG--------CUACUGCCACCGgUGCa---GGaa -5'
11615 5' -56.8 NC_003085.1 + 44654 0.68 0.480386
Target:  5'- aGUGuCGGUGcCGGgcuuugGGCC-CGUCCUg -3'
miRNA:   3'- -CGCuGCUACuGCCa-----CCGGuGCAGGAa -5'
11615 5' -56.8 NC_003085.1 + 19344 0.68 0.457346
Target:  5'- gGCGGCgGAUGGCguccguguagaggaGGcGGCCGgCGUCCUUc -3'
miRNA:   3'- -CGCUG-CUACUG--------------CCaCCGGU-GCAGGAA- -5'
11615 5' -56.8 NC_003085.1 + 8605 0.69 0.431074
Target:  5'- cGCGugG-UGACGGagaaGGaaucCCGCGUCCUg -3'
miRNA:   3'- -CGCugCuACUGCCa---CC----GGUGCAGGAa -5'
11615 5' -56.8 NC_003085.1 + 39137 0.69 0.42157
Target:  5'- gGCGACG-UGGCGGgGGCCGCaUCg-- -3'
miRNA:   3'- -CGCUGCuACUGCCaCCGGUGcAGgaa -5'
11615 5' -56.8 NC_003085.1 + 22621 0.69 0.42157
Target:  5'- uCGAgGGUGGCGGgGGCaCACG-CCUg -3'
miRNA:   3'- cGCUgCUACUGCCaCCG-GUGCaGGAa -5'
11615 5' -56.8 NC_003085.1 + 48787 0.69 0.402947
Target:  5'- -gGACGcgGGacaGGUGGCCggcgACGUCCg- -3'
miRNA:   3'- cgCUGCuaCUg--CCACCGG----UGCAGGaa -5'
11615 5' -56.8 NC_003085.1 + 11958 0.7 0.384854
Target:  5'- -gGugGuguUGAUGGUGGCCACGaCUUg -3'
miRNA:   3'- cgCugCu--ACUGCCACCGGUGCaGGAa -5'
11615 5' -56.8 NC_003085.1 + 24968 0.7 0.376011
Target:  5'- -gGAUGGuguUGAUGGUGGCCACcgccgccauGUCCUc -3'
miRNA:   3'- cgCUGCU---ACUGCCACCGGUG---------CAGGAa -5'
11615 5' -56.8 NC_003085.1 + 5565 0.7 0.350317
Target:  5'- gGCGccGCGA--ACGGUGcGCCACGUCUa- -3'
miRNA:   3'- -CGC--UGCUacUGCCAC-CGGUGCAGGaa -5'
11615 5' -56.8 NC_003085.1 + 44090 0.71 0.333895
Target:  5'- uCGACGGUGACGGgaccGGacgcgccgagucCCugGUCCUUc -3'
miRNA:   3'- cGCUGCUACUGCCa---CC------------GGugCAGGAA- -5'
11615 5' -56.8 NC_003085.1 + 23800 0.71 0.325897
Target:  5'- aCGACGAUG-CGGaUGuacuCCACGUCCUUg -3'
miRNA:   3'- cGCUGCUACuGCC-ACc---GGUGCAGGAA- -5'
11615 5' -56.8 NC_003085.1 + 20642 0.72 0.280915
Target:  5'- cGCgGACGAUGAC-GUGGCuCGCGUCg-- -3'
miRNA:   3'- -CG-CUGCUACUGcCACCG-GUGCAGgaa -5'
11615 5' -56.8 NC_003085.1 + 35729 0.72 0.273916
Target:  5'- aCGGCGAgGGCagGGUGGCCgAUGUCCUc -3'
miRNA:   3'- cGCUGCUaCUG--CCACCGG-UGCAGGAa -5'
11615 5' -56.8 NC_003085.1 + 19706 0.77 0.129692
Target:  5'- uGCGcACGAgguggggcgcGACGGcGGCCACGUCCUg -3'
miRNA:   3'- -CGC-UGCUa---------CUGCCaCCGGUGCAGGAa -5'
11615 5' -56.8 NC_003085.1 + 46794 1.08 0.000753
Target:  5'- cGCGACGAUGACGGUGGCCACGUCCUUg -3'
miRNA:   3'- -CGCUGCUACUGCCACCGGUGCAGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.