Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11616 | 5' | -60.9 | NC_003085.1 | + | 48985 | 0.68 | 0.308706 |
Target: 5'- -aGCCUC--GCCCGugggcaccugcaacAGCGCCGGcUGGc -3' miRNA: 3'- gaCGGAGaaCGGGC--------------UCGCGGCCuGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 48847 | 0.66 | 0.436903 |
Target: 5'- -cGCCa---GCCuCGAGCGCgcccaGGACGGc -3' miRNA: 3'- gaCGGagaaCGG-GCUCGCGg----CCUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 48771 | 0.71 | 0.198637 |
Target: 5'- -gGCCgc--GCCCGAG-GCCGGACGcGg -3' miRNA: 3'- gaCGGagaaCGGGCUCgCGGCCUGC-C- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 47953 | 1.1 | 0.000223 |
Target: 5'- gCUGCCUCUUGCCCGAGCGCCGGACGGg -3' miRNA: 3'- -GACGGAGAACGGGCUCGCGGCCUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 47582 | 0.67 | 0.36608 |
Target: 5'- gCUGCCUgauggGCCgaUGAGCGCaaGACGGa -3' miRNA: 3'- -GACGGAgaa--CGG--GCUCGCGgcCUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 47104 | 0.7 | 0.220074 |
Target: 5'- -cGUaUUCgaGCCCGucGCGCUGGACGGg -3' miRNA: 3'- gaCG-GAGaaCGGGCu-CGCGGCCUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 43651 | 0.66 | 0.4267 |
Target: 5'- -cGCCUCcagcaGCCCGGGgGgCGGgguugcaGCGGa -3' miRNA: 3'- gaCGGAGaa---CGGGCUCgCgGCC-------UGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 43504 | 0.7 | 0.237422 |
Target: 5'- -cGCCUCcagcaGCCCG-GCG-UGGACGGg -3' miRNA: 3'- gaCGGAGaa---CGGGCuCGCgGCCUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 42835 | 0.7 | 0.231516 |
Target: 5'- uUGCgCUCacGUCCG-GCGCCGGACu- -3' miRNA: 3'- gACG-GAGaaCGGGCuCGCGGCCUGcc -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 41992 | 0.69 | 0.275542 |
Target: 5'- -cGCCUCgccguguuccUGCCCcggcGGCGUCGGcACGGa -3' miRNA: 3'- gaCGGAGa---------ACGGGc---UCGCGGCC-UGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 40011 | 0.69 | 0.255901 |
Target: 5'- -gGCCUCgaGCUCguccauGAGCGCCGGcACGu -3' miRNA: 3'- gaCGGAGaaCGGG------CUCGCGGCC-UGCc -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 38552 | 0.66 | 0.418458 |
Target: 5'- -aGCC-CUUGCUggUGAGCGaCgCGGAgGGg -3' miRNA: 3'- gaCGGaGAACGG--GCUCGC-G-GCCUgCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 32269 | 0.66 | 0.409415 |
Target: 5'- -gGCCUCggugGCCCGGGacucgucuccCGUCaGGugGGc -3' miRNA: 3'- gaCGGAGaa--CGGGCUC----------GCGG-CCugCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 31999 | 0.71 | 0.203819 |
Target: 5'- gUGCCUUUcGCCaguaCGAGCGCCGGGa-- -3' miRNA: 3'- gACGGAGAaCGG----GCUCGCGGCCUgcc -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 29534 | 0.66 | 0.391699 |
Target: 5'- -aGCgUCUUGgCgCGGGCGUCGuGCGGc -3' miRNA: 3'- gaCGgAGAACgG-GCUCGCGGCcUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 28735 | 0.69 | 0.275542 |
Target: 5'- -gGCUUCcgUGagacgcaCCGGGUGCgGGACGGg -3' miRNA: 3'- gaCGGAGa-ACg------GGCUCGCGgCCUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 27345 | 0.68 | 0.318401 |
Target: 5'- gCUGCUgcg-GCgCCGGGCucuGCUGGGCGGc -3' miRNA: 3'- -GACGGagaaCG-GGCUCG---CGGCCUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 25776 | 0.66 | 0.418458 |
Target: 5'- gCUGCUgcgCggGCCCGcugcguGGaCGCCuGGGCGGc -3' miRNA: 3'- -GACGGa--GaaCGGGC------UC-GCGG-CCUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 25712 | 0.72 | 0.174418 |
Target: 5'- gCUGCCUCUcaccgacgUGUCCuucGGCGCCacGGugGGg -3' miRNA: 3'- -GACGGAGA--------ACGGGc--UCGCGG--CCugCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 24637 | 0.67 | 0.357801 |
Target: 5'- -cGCCUCggcGuCCUGGuugaaagccgcGCGCCGcGACGGg -3' miRNA: 3'- gaCGGAGaa-C-GGGCU-----------CGCGGC-CUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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