miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1163 5' -53.3 NC_001132.2 + 2150 0.66 0.981221
Target:  5'- gGAACGAG-CggcaGCGAGgGCGCg- -3'
miRNA:   3'- gUUUGCUCaGauugCGCUCgCGCGgg -5'
1163 5' -53.3 NC_001132.2 + 10137 0.66 0.97904
Target:  5'- ---cCGAGUUgaAACGCaGGGCGCgauggcuuauGCCCa -3'
miRNA:   3'- guuuGCUCAGa-UUGCG-CUCGCG----------CGGG- -5'
1163 5' -53.3 NC_001132.2 + 52396 0.66 0.971372
Target:  5'- aCAAAgGGGUUguuUAACGCGAGCaaCGUCg -3'
miRNA:   3'- -GUUUgCUCAG---AUUGCGCUCGc-GCGGg -5'
1163 5' -53.3 NC_001132.2 + 144350 0.67 0.965252
Target:  5'- aGAAgGAuUCUAGCGCGGauuCGUGUCCg -3'
miRNA:   3'- gUUUgCUcAGAUUGCGCUc--GCGCGGG- -5'
1163 5' -53.3 NC_001132.2 + 160768 0.67 0.961871
Target:  5'- ---uUGAGUUauACGCGGGacaaGCGCCg -3'
miRNA:   3'- guuuGCUCAGauUGCGCUCg---CGCGGg -5'
1163 5' -53.3 NC_001132.2 + 127312 0.67 0.954437
Target:  5'- aCGGugGcAGUCUcGACGCGguaAGUcCGCCCu -3'
miRNA:   3'- -GUUugC-UCAGA-UUGCGC---UCGcGCGGG- -5'
1163 5' -53.3 NC_001132.2 + 157633 0.68 0.94608
Target:  5'- -cGACGuGUCgauuaacGugGCGAucGCGaCGCCCg -3'
miRNA:   3'- guUUGCuCAGa------UugCGCU--CGC-GCGGG- -5'
1163 5' -53.3 NC_001132.2 + 37913 0.68 0.936774
Target:  5'- aCGAACGGGccUCUGACGaCGAccugGCG-GCCUg -3'
miRNA:   3'- -GUUUGCUC--AGAUUGC-GCU----CGCgCGGG- -5'
1163 5' -53.3 NC_001132.2 + 44826 0.7 0.85307
Target:  5'- -cGACGGG-C--ACGCGA-CGCGCCCa -3'
miRNA:   3'- guUUGCUCaGauUGCGCUcGCGCGGG- -5'
1163 5' -53.3 NC_001132.2 + 92292 0.73 0.730147
Target:  5'- --cACGAGUUgcguccguaacgucGACGCGAGCaGCGCCa -3'
miRNA:   3'- guuUGCUCAGa-------------UUGCGCUCG-CGCGGg -5'
1163 5' -53.3 NC_001132.2 + 46085 1.12 0.003589
Target:  5'- uCAAACGAGUCUAACGCGAGCGCGCCCg -3'
miRNA:   3'- -GUUUGCUCAGAUUGCGCUCGCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.