miRNA: 3'- gAGCUUGUgUG-GGCgGGCCAACUAUU- -5'
miRNA: 3'- gAGCUUGUGUGGGCGGGCCAACUAUU- -5'
miRNA: 3'- -GAGCUUGUGUGGGCGGGCCAACUAUU- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11640 | 5' | -53.9 | NC_003094.2 | + | 69952 | 0.67 | 0.915589 |
|
Target: 5'- aUCGAGCAgACgUCGaUCGGUUGAUGAa -3' miRNA: 3'- gAGCUUGUgUG-GGCgGGCCAACUAUU- -5' |
|||||||
| 11640 | 5' | -53.9 | NC_003094.2 | + | 50208 | 0.98 | 0.018238 |
|
Target: 5'- uUCGAACACACCCGCUCGGUUGAUAAa -3' miRNA: 3'- gAGCUUGUGUGGGCGGGCCAACUAUU- -5' |
|||||||
| 11640 | 5' | -53.9 | NC_003094.2 | + | 51060 | 1.07 | 0.004914 |
|
Target: 5'- aCUCGAACACACCCGCCCGGUUGAUAAa -3' miRNA: 3'- -GAGCUUGUGUGGGCGGGCCAACUAUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home