miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11643 3' -54.5 NC_003094.2 + 95378 0.66 0.925256
Target:  5'- -aUUGCgccacgcuuauGGCcAACGCAUUUUUCGCCGg -3'
miRNA:   3'- caAACG-----------UCGcUUGCGUGAGGAGCGGU- -5'
11643 3' -54.5 NC_003094.2 + 114167 0.71 0.644908
Target:  5'- ----uCAGCGAACGCACUacaUUGCCAa -3'
miRNA:   3'- caaacGUCGCUUGCGUGAgg-AGCGGU- -5'
11643 3' -54.5 NC_003094.2 + 20672 0.73 0.560884
Target:  5'- gGUUcGCAGCGGACGCuCUUCacuaaaUCGCCGg -3'
miRNA:   3'- -CAAaCGUCGCUUGCGuGAGG------AGCGGU- -5'
11643 3' -54.5 NC_003094.2 + 51181 0.76 0.405468
Target:  5'- --aUGuCGGCGGGCGCGuC-CCUCGCCAu -3'
miRNA:   3'- caaAC-GUCGCUUGCGU-GaGGAGCGGU- -5'
11643 3' -54.5 NC_003094.2 + 99710 1.09 0.002965
Target:  5'- aGUUUGCAGCGAACGCACUCCUCGCCAa -3'
miRNA:   3'- -CAAACGUCGCUUGCGUGAGGAGCGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.