miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11644 3' -50.5 NC_003094.2 + 35954 1.08 0.009702
Target:  5'- cCGUACAUUGCUACGCCCAACACGAGUu -3'
miRNA:   3'- -GCAUGUAACGAUGCGGGUUGUGCUCA- -5'
11644 3' -50.5 NC_003094.2 + 38847 0.66 0.989033
Target:  5'- uGUACA--GC-AUGUCCAugACGCGAGUa -3'
miRNA:   3'- gCAUGUaaCGaUGCGGGU--UGUGCUCA- -5'
11644 3' -50.5 NC_003094.2 + 46562 0.71 0.886206
Target:  5'- ---cUAUUGCUACgaaaGCCCAACACGAu- -3'
miRNA:   3'- gcauGUAACGAUG----CGGGUUGUGCUca -5'
11644 3' -50.5 NC_003094.2 + 57916 0.69 0.958327
Target:  5'- uGUACaAUUGCaGCGCuUCGACACGAu- -3'
miRNA:   3'- gCAUG-UAACGaUGCG-GGUUGUGCUca -5'
11644 3' -50.5 NC_003094.2 + 78358 0.66 0.992748
Target:  5'- -aUACAcccUUGCUGcCGUCCGACAUGcGUa -3'
miRNA:   3'- gcAUGU---AACGAU-GCGGGUUGUGCuCA- -5'
11644 3' -50.5 NC_003094.2 + 88954 0.72 0.85537
Target:  5'- gGUAUAUgcGCUACGaCCAAUGCGGGUg -3'
miRNA:   3'- gCAUGUAa-CGAUGCgGGUUGUGCUCA- -5'
11644 3' -50.5 NC_003094.2 + 91090 0.66 0.987511
Target:  5'- gCGUACGUgacacugGUcAUGCUCGGCgACGAGUa -3'
miRNA:   3'- -GCAUGUAa------CGaUGCGGGUUG-UGCUCA- -5'
11644 3' -50.5 NC_003094.2 + 98206 0.66 0.992748
Target:  5'- aCGUaagaACAUUGCggUGCCCAACguGCGuGUu -3'
miRNA:   3'- -GCA----UGUAACGauGCGGGUUG--UGCuCA- -5'
11644 3' -50.5 NC_003094.2 + 104979 0.66 0.992748
Target:  5'- cCGUGCcgUGUUuCGCCCcuGGCGUGGGUc -3'
miRNA:   3'- -GCAUGuaACGAuGCGGG--UUGUGCUCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.