miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11644 5' -52.4 NC_003094.2 + 45898 0.66 0.974266
Target:  5'- uUCACUCGaUUGUGUGAcGUGAuauGGCuGUUCa -3'
miRNA:   3'- -AGUGAGC-AACGCGCU-CGUU---UCG-CAGG- -5'
11644 5' -52.4 NC_003094.2 + 128429 0.67 0.954087
Target:  5'- uUCACUUGUUcguugaGCGCGuuguuauuuuuGGCuAAAGCGUgCa -3'
miRNA:   3'- -AGUGAGCAA------CGCGC-----------UCG-UUUCGCAgG- -5'
11644 5' -52.4 NC_003094.2 + 90925 0.68 0.930692
Target:  5'- gUACUCGUcGC-CGAGCAugaccAGUGUCa -3'
miRNA:   3'- aGUGAGCAaCGcGCUCGUu----UCGCAGg -5'
11644 5' -52.4 NC_003094.2 + 51204 0.68 0.935873
Target:  5'- gCACggCGUucaucccgUGCGCGAugucgGCGGGcGCGUCCc -3'
miRNA:   3'- aGUGa-GCA--------ACGCGCU-----CGUUU-CGCAGG- -5'
11644 5' -52.4 NC_003094.2 + 35990 1.14 0.002721
Target:  5'- uUCACUCGUUGCGCGAGCAAAGCGUCCa -3'
miRNA:   3'- -AGUGAGCAACGCGCUCGUUUCGCAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.