miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11645 5' -61.5 NC_003094.2 + 81545 1.09 0.000808
Target:  5'- cACCGCCCGAACGCCUGCGACCUCCGCc -3'
miRNA:   3'- -UGGCGGGCUUGCGGACGCUGGAGGCG- -5'
11645 5' -61.5 NC_003094.2 + 81704 0.85 0.041295
Target:  5'- gACCGCCCGAACGUCUaCGGCCgCCGCc -3'
miRNA:   3'- -UGGCGGGCUUGCGGAcGCUGGaGGCG- -5'
11645 5' -61.5 NC_003094.2 + 81524 0.71 0.354745
Target:  5'- cACCGCUCGAACGUCUGCGACn----- -3'
miRNA:   3'- -UGGCGGGCUUGCGGACGCUGgaggcg -5'
11645 5' -61.5 NC_003094.2 + 81731 0.7 0.410748
Target:  5'- cGCCGCCUGAGCGUC-GCcuuccACCaCCGCu -3'
miRNA:   3'- -UGGCGGGCUUGCGGaCGc----UGGaGGCG- -5'
11645 5' -61.5 NC_003094.2 + 81662 0.67 0.605673
Target:  5'- cACCGCUgGAACuGCgUcGaCGACCgCCGCu -3'
miRNA:   3'- -UGGCGGgCUUG-CGgA-C-GCUGGaGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.