miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11646 3' -56 NC_003094.2 + 17606 0.69 0.744241
Target:  5'- uUGUaaacUGACGACUGCCGCUgauaAGAACUu -3'
miRNA:   3'- gACGca--GCUGCUGGCGGCGA----UCUUGA- -5'
11646 3' -56 NC_003094.2 + 17695 0.66 0.895124
Target:  5'- -cGCuUUGGCGACCGCCGU---AACg -3'
miRNA:   3'- gaCGcAGCUGCUGGCGGCGaucUUGa -5'
11646 3' -56 NC_003094.2 + 81672 1.09 0.002751
Target:  5'- aCUGCGUCGACGACCGCCGCUAGAACUg -3'
miRNA:   3'- -GACGCAGCUGCUGGCGGCGAUCUUGA- -5'
11646 3' -56 NC_003094.2 + 81697 0.73 0.515682
Target:  5'- nUGCGUCGAccgcccgaacgucuaCGGCCGCCGCcgccgccuGAGCg -3'
miRNA:   3'- gACGCAGCU---------------GCUGGCGGCGau------CUUGa -5'
11646 3' -56 NC_003094.2 + 113654 0.66 0.895124
Target:  5'- uCUGCGUCcuCGACUGuuGCUucGGCUg -3'
miRNA:   3'- -GACGCAGcuGCUGGCggCGAucUUGA- -5'
11646 3' -56 NC_003094.2 + 113684 0.75 0.436343
Target:  5'- uCUGCGUCcGCGACUGuuGCUAcGGCUg -3'
miRNA:   3'- -GACGCAGcUGCUGGCggCGAUcUUGA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.