miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11646 5' -60.7 NC_003094.2 + 16801 0.69 0.512481
Target:  5'- uCGGGCGUUUGuauuucauuuuCGGCaccgucgcgcaCCGCCGCCGCc -3'
miRNA:   3'- -GCUUGCAGAU-----------GCCGgc---------GGCGGCGGCG- -5'
11646 5' -60.7 NC_003094.2 + 26245 0.79 0.131
Target:  5'- --uGCGUaauUUGCcGCCGCCGCCGCCGCc -3'
miRNA:   3'- gcuUGCA---GAUGcCGGCGGCGGCGGCG- -5'
11646 5' -60.7 NC_003094.2 + 26338 0.75 0.240231
Target:  5'- gGGAUGUauuuguaACGGCUGCUGCUGCUGCg -3'
miRNA:   3'- gCUUGCAga-----UGCCGGCGGCGGCGGCG- -5'
11646 5' -60.7 NC_003094.2 + 58636 0.7 0.459262
Target:  5'- -cGACGcaaccaUCUGC-GCCGCCaCCGCCGCc -3'
miRNA:   3'- gcUUGC------AGAUGcCGGCGGcGGCGGCG- -5'
11646 5' -60.7 NC_003094.2 + 60589 0.67 0.669428
Target:  5'- uCGAAgGuaucauaUCUACGGggacggGCCGCCGCUGUa -3'
miRNA:   3'- -GCUUgC-------AGAUGCCgg----CGGCGGCGGCG- -5'
11646 5' -60.7 NC_003094.2 + 81530 0.74 0.293219
Target:  5'- uCGAACGUCUGCGaccaCCGcCCGaacgccugcgaccuCCGCCGCc -3'
miRNA:   3'- -GCUUGCAGAUGCc---GGC-GGC--------------GGCGGCG- -5'
11646 5' -60.7 NC_003094.2 + 81594 0.67 0.630972
Target:  5'- aGAACuUCUucguCGucuuCCGCCGCCGCCa- -3'
miRNA:   3'- gCUUGcAGAu---GCc---GGCGGCGGCGGcg -5'
11646 5' -60.7 NC_003094.2 + 81710 1.1 0.000926
Target:  5'- cCGAACGUCUACGGCCGCCGCCGCCGCc -3'
miRNA:   3'- -GCUUGCAGAUGCCGGCGGCGGCGGCG- -5'
11646 5' -60.7 NC_003094.2 + 81738 0.74 0.269639
Target:  5'- uGAGCGUCgccuuccaccACcGCUGCCGCUGCUGCu -3'
miRNA:   3'- gCUUGCAGa---------UGcCGGCGGCGGCGGCG- -5'
11646 5' -60.7 NC_003094.2 + 107621 0.68 0.580758
Target:  5'- uGAGCGcCggaauCGGUCGCagaccaaUGCCGCUGCu -3'
miRNA:   3'- gCUUGCaGau---GCCGGCG-------GCGGCGGCG- -5'
11646 5' -60.7 NC_003094.2 + 116656 0.71 0.391025
Target:  5'- -cAACGUugCUGCaguaGCCGCUGCCGCCGa -3'
miRNA:   3'- gcUUGCA--GAUGc---CGGCGGCGGCGGCg -5'
11646 5' -60.7 NC_003094.2 + 116919 0.67 0.630972
Target:  5'- aGAAUGUacgaUACGGCUaauGuuGUCGCCGa -3'
miRNA:   3'- gCUUGCAg---AUGCCGG---CggCGGCGGCg -5'
11646 5' -60.7 NC_003094.2 + 126159 0.72 0.367195
Target:  5'- aCGAAUGUa-ACGGCacauauuGUCGUCGCCGCa -3'
miRNA:   3'- -GCUUGCAgaUGCCGg------CGGCGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.