miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11648 5' -60.1 NC_003094.2 + 81859 0.66 0.734229
Target:  5'- gCGCGGcCGUAGACGUucgggcGGUCGAcGCa- -3'
miRNA:   3'- -GCGCCuGCGUCUGCG------UCGGCUuCGgc -5'
11648 5' -60.1 NC_003094.2 + 35772 0.67 0.665587
Target:  5'- gCGCGGucgaauACGU--ACGCAGCCuuGGCCa -3'
miRNA:   3'- -GCGCC------UGCGucUGCGUCGGcuUCGGc -5'
11648 5' -60.1 NC_003094.2 + 65126 0.67 0.655612
Target:  5'- cCGUGGACGCAGACaaugGC-GCUaaaAAGCCu -3'
miRNA:   3'- -GCGCCUGCGUCUG----CGuCGGc--UUCGGc -5'
11648 5' -60.1 NC_003094.2 + 81681 0.67 0.625609
Target:  5'- gGCGGugguCGCAGACGUucgAGCgGuGGUCGc -3'
miRNA:   3'- gCGCCu---GCGUCUGCG---UCGgCuUCGGC- -5'
11648 5' -60.1 NC_003094.2 + 128629 0.68 0.569861
Target:  5'- -aUGGACGCGGACGauGCCGAagaauugcacgcuuuAGCCa -3'
miRNA:   3'- gcGCCUGCGUCUGCguCGGCU---------------UCGGc -5'
11648 5' -60.1 NC_003094.2 + 16630 0.68 0.562962
Target:  5'- gGCGGuGCGC-GACGguGCCGAAaaugaaauacaaacGCCc -3'
miRNA:   3'- gCGCC-UGCGuCUGCguCGGCUU--------------CGGc -5'
11648 5' -60.1 NC_003094.2 + 75238 0.69 0.546306
Target:  5'- -cUGGugGCGGugGUGGuuGAGGCgGu -3'
miRNA:   3'- gcGCCugCGUCugCGUCggCUUCGgC- -5'
11648 5' -60.1 NC_003094.2 + 50185 0.71 0.408771
Target:  5'- aGUGGcgaGCGGACGCAGCCaacauGGCCc -3'
miRNA:   3'- gCGCCug-CGUCUGCGUCGGcu---UCGGc -5'
11648 5' -60.1 NC_003094.2 + 81723 0.76 0.212431
Target:  5'- gGCGGACGUAGAagaucagGCGGCgGAGGUCGc -3'
miRNA:   3'- gCGCCUGCGUCUg------CGUCGgCUUCGGC- -5'
11648 5' -60.1 NC_003094.2 + 113482 0.79 0.12943
Target:  5'- cCGaaGACGCAGuCGCAGCCGAAGCa- -3'
miRNA:   3'- -GCgcCUGCGUCuGCGUCGGCUUCGgc -5'
11648 5' -60.1 NC_003094.2 + 113512 0.83 0.079344
Target:  5'- uCGaGGACGCAGACGCAGCCGuAGCa- -3'
miRNA:   3'- -GCgCCUGCGUCUGCGUCGGCuUCGgc -5'
11648 5' -60.1 NC_003094.2 + 113542 1.08 0.001359
Target:  5'- uCGCGGACGCAGACGCAGCCGAAGCCGu -3'
miRNA:   3'- -GCGCCUGCGUCUGCGUCGGCUUCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.