miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11649 3' -50.6 NC_003094.2 + 76677 0.66 0.990619
Target:  5'- -cGGUgacgacgACAUUgcUAUCGAUGGCAG-CGAc -3'
miRNA:   3'- uuCCA-------UGUAA--AUGGCUGCCGUCuGCU- -5'
11649 3' -50.6 NC_003094.2 + 105145 0.66 0.989406
Target:  5'- ----cAUAUUUcCCGACGGCAGAUa- -3'
miRNA:   3'- uuccaUGUAAAuGGCUGCCGUCUGcu -5'
11649 3' -50.6 NC_003094.2 + 112093 0.67 0.980298
Target:  5'- --cGUACGUUUGCUGGCGcCAGugGu -3'
miRNA:   3'- uucCAUGUAAAUGGCUGCcGUCugCu -5'
11649 3' -50.6 NC_003094.2 + 87288 0.75 0.671227
Target:  5'- aAAGGagACGUUuccagUGCCGGCGGCGGAUGu -3'
miRNA:   3'- -UUCCa-UGUAA-----AUGGCUGCCGUCUGCu -5'
11649 3' -50.6 NC_003094.2 + 120369 1.07 0.010432
Target:  5'- cAAGGUACAUUUACCGACGGCAGACGAc -3'
miRNA:   3'- -UUCCAUGUAAAUGGCUGCCGUCUGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.