miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11649 5' -48.7 NC_003094.2 + 120403 1.08 0.013918
Target:  5'- cUGUCGUGAAUGCCGCCGACAAAAACUc -3'
miRNA:   3'- -ACAGCACUUACGGCGGCUGUUUUUGA- -5'
11649 5' -48.7 NC_003094.2 + 71370 0.75 0.818467
Target:  5'- aGUCGUGuaguUGCCGUCGGCAcgguAACa -3'
miRNA:   3'- aCAGCACuu--ACGGCGGCUGUuu--UUGa -5'
11649 5' -48.7 NC_003094.2 + 76817 0.74 0.869769
Target:  5'- cGUCGUcAccGCCGCUGACAAuuauGACUa -3'
miRNA:   3'- aCAGCAcUuaCGGCGGCUGUUu---UUGA- -5'
11649 5' -48.7 NC_003094.2 + 17608 0.73 0.877515
Target:  5'- aGUUGUaaacugacGAcUGCCGCUGAUAAGAACUu -3'
miRNA:   3'- aCAGCA--------CUuACGGCGGCUGUUUUUGA- -5'
11649 5' -48.7 NC_003094.2 + 86730 0.72 0.924525
Target:  5'- gGUCGUGuacGUGCCaaCCGACGAcGACa -3'
miRNA:   3'- aCAGCACu--UACGGc-GGCUGUUuUUGa -5'
11649 5' -48.7 NC_003094.2 + 123658 0.69 0.982238
Target:  5'- -aUCGUG-AUGUCGCCGAUcuGGAUa -3'
miRNA:   3'- acAGCACuUACGGCGGCUGuuUUUGa -5'
11649 5' -48.7 NC_003094.2 + 125304 0.69 0.982238
Target:  5'- uUGUUGUGGAcaUGCCGCUGAauuGuuACg -3'
miRNA:   3'- -ACAGCACUU--ACGGCGGCUgu-UuuUGa -5'
11649 5' -48.7 NC_003094.2 + 58363 0.67 0.992884
Target:  5'- cGUCauuauuaGUGAgucGUGUCGgCGGCGAAGACg -3'
miRNA:   3'- aCAG-------CACU---UACGGCgGCUGUUUUUGa -5'
11649 5' -48.7 NC_003094.2 + 83325 0.66 0.99733
Target:  5'- cGUCGcGAAgauUGuuGUCGACGuuGACg -3'
miRNA:   3'- aCAGCaCUU---ACggCGGCUGUuuUUGa -5'
11649 5' -48.7 NC_003094.2 + 85696 0.66 0.998141
Target:  5'- -aUCGUcGAA--CCGCCGACGAAuGCa -3'
miRNA:   3'- acAGCA-CUUacGGCGGCUGUUUuUGa -5'
11649 5' -48.7 NC_003094.2 + 74001 0.66 0.998141
Target:  5'- uUGUCGUGc-UGCCGCCcaACGuGAAUUg -3'
miRNA:   3'- -ACAGCACuuACGGCGGc-UGUuUUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.