miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11650 5' -48 NC_003102.1 + 120075 0.66 0.999434
Target:  5'- aUGCGCA------UGGAAGACGCaGACg -3'
miRNA:   3'- -AUGCGUugcuuuACCUUCUGUG-CUGa -5'
11650 5' -48 NC_003102.1 + 63422 0.66 0.99869
Target:  5'- aGCGCAgcguuccgcuaACGAuAUGGAAGAUuuGCuGGCg -3'
miRNA:   3'- aUGCGU-----------UGCUuUACCUUCUG--UG-CUGa -5'
11650 5' -48 NC_003102.1 + 88140 0.66 0.99869
Target:  5'- --aGCAGCGGA--GGAAGACGcCGAa- -3'
miRNA:   3'- augCGUUGCUUuaCCUUCUGU-GCUga -5'
11650 5' -48 NC_003102.1 + 100766 0.66 0.99869
Target:  5'- gGCGCuACGGGA-GGAcgcgugauGGGCGCGAUc -3'
miRNA:   3'- aUGCGuUGCUUUaCCU--------UCUGUGCUGa -5'
11650 5' -48 NC_003102.1 + 37918 0.67 0.998078
Target:  5'- gGCGCGACGA---GGAcGACgaaaGCGGCa -3'
miRNA:   3'- aUGCGUUGCUuuaCCUuCUG----UGCUGa -5'
11650 5' -48 NC_003102.1 + 133944 0.68 0.996122
Target:  5'- aGCGCcguaauCGAGAUGGcGGACAacauCGACa -3'
miRNA:   3'- aUGCGuu----GCUUUACCuUCUGU----GCUGa -5'
11650 5' -48 NC_003102.1 + 10879 0.68 0.996122
Target:  5'- aUACGCAGCGAc-UGGccGACGaGACg -3'
miRNA:   3'- -AUGCGUUGCUuuACCuuCUGUgCUGa -5'
11650 5' -48 NC_003102.1 + 46696 0.68 0.996122
Target:  5'- gACGCGACGuguccgauuAUGGAAaacucGACAUGGCc -3'
miRNA:   3'- aUGCGUUGCuu-------UACCUU-----CUGUGCUGa -5'
11650 5' -48 NC_003102.1 + 44228 0.68 0.996122
Target:  5'- aUGCGCGACGGAAUGGAcGGuguuCGCuuuGCUc -3'
miRNA:   3'- -AUGCGUUGCUUUACCU-UCu---GUGc--UGA- -5'
11650 5' -48 NC_003102.1 + 35168 0.68 0.995437
Target:  5'- cAUGCAACGcGAucUGGGA-ACGCGGCUa -3'
miRNA:   3'- aUGCGUUGCuUU--ACCUUcUGUGCUGA- -5'
11650 5' -48 NC_003102.1 + 73531 0.68 0.994655
Target:  5'- cUACGuCGACGGuaacaGAAGGCACGAUUa -3'
miRNA:   3'- -AUGC-GUUGCUuuac-CUUCUGUGCUGA- -5'
11650 5' -48 NC_003102.1 + 102035 0.68 0.994655
Target:  5'- --aGCGGCGGcGGUGGcGGugGCGGCg -3'
miRNA:   3'- augCGUUGCU-UUACCuUCugUGCUGa -5'
11650 5' -48 NC_003102.1 + 72476 0.69 0.991644
Target:  5'- cUGCGCAAaGAAcUGGgcGGCAgCGACg -3'
miRNA:   3'- -AUGCGUUgCUUuACCuuCUGU-GCUGa -5'
11650 5' -48 NC_003102.1 + 32419 0.69 0.988983
Target:  5'- gGCgGCAACGGuuGAgaaGAAGACGCGACc -3'
miRNA:   3'- aUG-CGUUGCU--UUac-CUUCUGUGCUGa -5'
11650 5' -48 NC_003102.1 + 31972 0.7 0.985704
Target:  5'- ---aCAACGAucUGGAAGACuGCGACg -3'
miRNA:   3'- augcGUUGCUuuACCUUCUG-UGCUGa -5'
11650 5' -48 NC_003102.1 + 73496 0.71 0.961212
Target:  5'- gACGaCGACGAcgacGAGGACGCGACg -3'
miRNA:   3'- aUGC-GUUGCUuuacCUUCUGUGCUGa -5'
11650 5' -48 NC_003102.1 + 70309 0.73 0.910466
Target:  5'- gACGaCGACGAGGaGGAGGAUaACGACg -3'
miRNA:   3'- aUGC-GUUGCUUUaCCUUCUG-UGCUGa -5'
11650 5' -48 NC_003102.1 + 126785 0.73 0.910466
Target:  5'- uUACGUucgauacACGAucGUGGAGGAUACGGCUu -3'
miRNA:   3'- -AUGCGu------UGCUu-UACCUUCUGUGCUGA- -5'
11650 5' -48 NC_003102.1 + 82181 0.75 0.842147
Target:  5'- aAUGCggUGA--UGGAGGACGCGAUg -3'
miRNA:   3'- aUGCGuuGCUuuACCUUCUGUGCUGa -5'
11650 5' -48 NC_003102.1 + 12934 0.76 0.805806
Target:  5'- gUGCGCAcgcuCGAAAaGGAaguGGACACGACg -3'
miRNA:   3'- -AUGCGUu---GCUUUaCCU---UCUGUGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.