Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11650 | 5' | -48 | NC_003102.1 | + | 120075 | 0.66 | 0.999434 |
Target: 5'- aUGCGCA------UGGAAGACGCaGACg -3' miRNA: 3'- -AUGCGUugcuuuACCUUCUGUG-CUGa -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 63422 | 0.66 | 0.99869 |
Target: 5'- aGCGCAgcguuccgcuaACGAuAUGGAAGAUuuGCuGGCg -3' miRNA: 3'- aUGCGU-----------UGCUuUACCUUCUG--UG-CUGa -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 88140 | 0.66 | 0.99869 |
Target: 5'- --aGCAGCGGA--GGAAGACGcCGAa- -3' miRNA: 3'- augCGUUGCUUuaCCUUCUGU-GCUga -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 100766 | 0.66 | 0.99869 |
Target: 5'- gGCGCuACGGGA-GGAcgcgugauGGGCGCGAUc -3' miRNA: 3'- aUGCGuUGCUUUaCCU--------UCUGUGCUGa -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 37918 | 0.67 | 0.998078 |
Target: 5'- gGCGCGACGA---GGAcGACgaaaGCGGCa -3' miRNA: 3'- aUGCGUUGCUuuaCCUuCUG----UGCUGa -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 133944 | 0.68 | 0.996122 |
Target: 5'- aGCGCcguaauCGAGAUGGcGGACAacauCGACa -3' miRNA: 3'- aUGCGuu----GCUUUACCuUCUGU----GCUGa -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 10879 | 0.68 | 0.996122 |
Target: 5'- aUACGCAGCGAc-UGGccGACGaGACg -3' miRNA: 3'- -AUGCGUUGCUuuACCuuCUGUgCUGa -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 46696 | 0.68 | 0.996122 |
Target: 5'- gACGCGACGuguccgauuAUGGAAaacucGACAUGGCc -3' miRNA: 3'- aUGCGUUGCuu-------UACCUU-----CUGUGCUGa -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 44228 | 0.68 | 0.996122 |
Target: 5'- aUGCGCGACGGAAUGGAcGGuguuCGCuuuGCUc -3' miRNA: 3'- -AUGCGUUGCUUUACCU-UCu---GUGc--UGA- -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 35168 | 0.68 | 0.995437 |
Target: 5'- cAUGCAACGcGAucUGGGA-ACGCGGCUa -3' miRNA: 3'- aUGCGUUGCuUU--ACCUUcUGUGCUGA- -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 73531 | 0.68 | 0.994655 |
Target: 5'- cUACGuCGACGGuaacaGAAGGCACGAUUa -3' miRNA: 3'- -AUGC-GUUGCUuuac-CUUCUGUGCUGA- -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 102035 | 0.68 | 0.994655 |
Target: 5'- --aGCGGCGGcGGUGGcGGugGCGGCg -3' miRNA: 3'- augCGUUGCU-UUACCuUCugUGCUGa -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 72476 | 0.69 | 0.991644 |
Target: 5'- cUGCGCAAaGAAcUGGgcGGCAgCGACg -3' miRNA: 3'- -AUGCGUUgCUUuACCuuCUGU-GCUGa -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 32419 | 0.69 | 0.988983 |
Target: 5'- gGCgGCAACGGuuGAgaaGAAGACGCGACc -3' miRNA: 3'- aUG-CGUUGCU--UUac-CUUCUGUGCUGa -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 31972 | 0.7 | 0.985704 |
Target: 5'- ---aCAACGAucUGGAAGACuGCGACg -3' miRNA: 3'- augcGUUGCUuuACCUUCUG-UGCUGa -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 73496 | 0.71 | 0.961212 |
Target: 5'- gACGaCGACGAcgacGAGGACGCGACg -3' miRNA: 3'- aUGC-GUUGCUuuacCUUCUGUGCUGa -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 70309 | 0.73 | 0.910466 |
Target: 5'- gACGaCGACGAGGaGGAGGAUaACGACg -3' miRNA: 3'- aUGC-GUUGCUUUaCCUUCUG-UGCUGa -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 126785 | 0.73 | 0.910466 |
Target: 5'- uUACGUucgauacACGAucGUGGAGGAUACGGCUu -3' miRNA: 3'- -AUGCGu------UGCUu-UACCUUCUGUGCUGA- -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 82181 | 0.75 | 0.842147 |
Target: 5'- aAUGCggUGA--UGGAGGACGCGAUg -3' miRNA: 3'- aUGCGuuGCUuuACCUUCUGUGCUGa -5' |
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11650 | 5' | -48 | NC_003102.1 | + | 12934 | 0.76 | 0.805806 |
Target: 5'- gUGCGCAcgcuCGAAAaGGAaguGGACACGACg -3' miRNA: 3'- -AUGCGUu---GCUUUaCCU---UCUGUGCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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