miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11651 3' -49.3 NC_003102.1 + 7684 0.66 0.995945
Target:  5'- cGCCCGAgaCUugGAAAAGUCuGAa--- -3'
miRNA:   3'- uUGGGCU--GAugCUUUUCAGuCUgugc -5'
11651 3' -49.3 NC_003102.1 + 10608 0.84 0.348774
Target:  5'- aAACCCGA-UACGAAAAGUCAGACAa- -3'
miRNA:   3'- -UUGGGCUgAUGCUUUUCAGUCUGUgc -5'
11651 3' -49.3 NC_003102.1 + 10686 0.86 0.280615
Target:  5'- aAGCCaUGuCUACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGG-GCuGAUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 10767 1.07 0.015911
Target:  5'- aAACCCGACUACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGGGCUGAUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 16602 0.66 0.99792
Target:  5'- cGCCgCGACUGCGGAGAaUCgcggcgaucaaccAGACGCc -3'
miRNA:   3'- uUGG-GCUGAUGCUUUUcAG-------------UCUGUGc -5'
11651 3' -49.3 NC_003102.1 + 20793 0.73 0.891166
Target:  5'- uAAUCgCGACUACGAcgacgacGAGUUGGACGCGa -3'
miRNA:   3'- -UUGG-GCUGAUGCUu------UUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 26003 0.78 0.644517
Target:  5'- uAACCUGuuUACGAAAAGUCGGcCACGu -3'
miRNA:   3'- -UUGGGCugAUGCUUUUCAGUCuGUGC- -5'
11651 3' -49.3 NC_003102.1 + 26083 0.76 0.770255
Target:  5'- aAACgCGuCUACaAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGgGCuGAUGcUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 26142 0.98 0.053515
Target:  5'- aAACCCGACUACGAAAAGUCAGACAa- -3'
miRNA:   3'- -UUGGGCUGAUGCUUUUCAGUCUGUgc -5'
11651 3' -49.3 NC_003102.1 + 26225 0.98 0.053515
Target:  5'- aAACCCGACUACGAAAAGUCAGACAa- -3'
miRNA:   3'- -UUGGGCUGAUGCUUUUCAGUCUGUgc -5'
11651 3' -49.3 NC_003102.1 + 26304 0.76 0.750167
Target:  5'- --aUCGACauguuaACGAAAAGUCAGACACGu -3'
miRNA:   3'- uugGGCUGa-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 26361 0.69 0.971182
Target:  5'- aAACauGuuaACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCugaUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 26751 0.85 0.317097
Target:  5'- aAACUCGACacguccACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGGGCUGa-----UGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 31976 0.66 0.997514
Target:  5'- cGAUCUggaaGACUGCGAcgAGAGUCuaguguacguuuuGGACGCGa -3'
miRNA:   3'- -UUGGG----CUGAUGCU--UUUCAG-------------UCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 36641 0.66 0.997093
Target:  5'- cACCCGACaacauuUACaAAGAGUucaaCAGACACa -3'
miRNA:   3'- uUGGGCUG------AUGcUUUUCA----GUCUGUGc -5'
11651 3' -49.3 NC_003102.1 + 42934 0.67 0.995245
Target:  5'- ---aUGGCgcaauaacauCGAAAAGUCAGACGCGu -3'
miRNA:   3'- uuggGCUGau--------GCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 47263 0.66 0.996558
Target:  5'- -uCCC-ACacGCGAAAuAGUCAGGCGCGu -3'
miRNA:   3'- uuGGGcUGa-UGCUUU-UCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 55942 0.73 0.886871
Target:  5'- aAACuuGuGCaaaaauuuuauauguUACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggC-UG---------------AUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 56050 0.76 0.729616
Target:  5'- aAACauGuuUACGAAAAGUCAGACACGu -3'
miRNA:   3'- -UUGggCugAUGCUUUUCAGUCUGUGC- -5'
11651 3' -49.3 NC_003102.1 + 58821 0.66 0.997093
Target:  5'- gAugCCGACUGCGAcggcGAcGUCGacgacGACACc -3'
miRNA:   3'- -UugGGCUGAUGCU----UUuCAGU-----CUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.