Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11651 | 3' | -49.3 | NC_003102.1 | + | 26361 | 0.69 | 0.971182 |
Target: 5'- aAACauGuuaACGAAAAGUCAGACACGu -3' miRNA: 3'- -UUGggCugaUGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 130829 | 0.7 | 0.957319 |
Target: 5'- cGCuuGACUACGAAAauGGUUAcGGCGCc -3' miRNA: 3'- uUGggCUGAUGCUUU--UCAGU-CUGUGc -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 61347 | 0.7 | 0.953243 |
Target: 5'- ----aGACUuaaaGAAAAGUCAGACACGu -3' miRNA: 3'- uugggCUGAug--CUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 104485 | 0.7 | 0.953243 |
Target: 5'- cAACCC----ACGAAAAGUCuGACACGu -3' miRNA: 3'- -UUGGGcugaUGCUUUUCAGuCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 89602 | 0.71 | 0.948914 |
Target: 5'- ----aGuuUACGAAAAGUCGGACACGu -3' miRNA: 3'- uugggCugAUGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 67152 | 0.71 | 0.934364 |
Target: 5'- uACaaGAgUaguuaACGAAAAGUCAGACACGu -3' miRNA: 3'- uUGggCUgA-----UGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 137281 | 0.72 | 0.923342 |
Target: 5'- uAACauGuCcACGAAAAGUCAGACACGu -3' miRNA: 3'- -UUGggCuGaUGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 137204 | 0.72 | 0.923342 |
Target: 5'- uAACauGuCcACGAAAAGUCAGACACGu -3' miRNA: 3'- -UUGggCuGaUGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 67442 | 0.72 | 0.917432 |
Target: 5'- --gCCGACUuuaaacauguuuGCaAAAAGUCAGACACGu -3' miRNA: 3'- uugGGCUGA------------UGcUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 137127 | 0.73 | 0.891166 |
Target: 5'- aGACauGuCcACGAAAAGUCAGACACGu -3' miRNA: 3'- -UUGggCuGaUGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 20793 | 0.73 | 0.891166 |
Target: 5'- uAAUCgCGACUACGAcgacgacGAGUUGGACGCGa -3' miRNA: 3'- -UUGG-GCUGAUGCUu------UUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 55942 | 0.73 | 0.886871 |
Target: 5'- aAACuuGuGCaaaaauuuuauauguUACGAAAAGUCAGACACGu -3' miRNA: 3'- -UUGggC-UG---------------AUGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 89676 | 0.73 | 0.868802 |
Target: 5'- cACCaGAuuCUACGAAAAGUCAGcCACGu -3' miRNA: 3'- uUGGgCU--GAUGCUUUUCAGUCuGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 137326 | 0.74 | 0.852701 |
Target: 5'- ---aCGGCUAUGAAAAGUCGGcCGCGu -3' miRNA: 3'- uuggGCUGAUGCUUUUCAGUCuGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 137402 | 0.74 | 0.852701 |
Target: 5'- ---aCGGCUAUGAAAAGUCGGcCGCGu -3' miRNA: 3'- uuggGCUGAUGCUUUUCAGUCuGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 89427 | 0.74 | 0.852701 |
Target: 5'- aAACauGuCUAUGAAAAGUCAGACAUGu -3' miRNA: 3'- -UUGggCuGAUGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 26083 | 0.76 | 0.770255 |
Target: 5'- aAACgCGuCUACaAAAAGUCAGACACGu -3' miRNA: 3'- -UUGgGCuGAUGcUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 26304 | 0.76 | 0.750167 |
Target: 5'- --aUCGACauguuaACGAAAAGUCAGACACGu -3' miRNA: 3'- uugGGCUGa-----UGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 56050 | 0.76 | 0.729616 |
Target: 5'- aAACauGuuUACGAAAAGUCAGACACGu -3' miRNA: 3'- -UUGggCugAUGCUUUUCAGUCUGUGC- -5' |
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11651 | 3' | -49.3 | NC_003102.1 | + | 103506 | 0.77 | 0.708691 |
Target: 5'- ---aCGugUccGCGAAAAGUCAGACACGu -3' miRNA: 3'- uuggGCugA--UGCUUUUCAGUCUGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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