Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11651 | 5' | -52.1 | NC_003102.1 | + | 10732 | 1.03 | 0.011149 |
Target: 5'- gAACCUGGCCGACUUUUCGUGCUGAAUc -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACGACUUA- -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 103480 | 0.91 | 0.067154 |
Target: 5'- gAACCUGGCCGACUUUUCGUGCUc--- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACGAcuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 26190 | 0.91 | 0.067154 |
Target: 5'- gAACCUGGCCGACUUUUCGUGCUu--- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACGAcuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 10815 | 0.91 | 0.071077 |
Target: 5'- uAACCUGGCCGACUUUUCGUGCUu--- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACGAcuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 26107 | 0.87 | 0.120997 |
Target: 5'- gAACCUGGCCGACUUUUUGUGCUc--- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACGAcuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 26267 | 0.87 | 0.131398 |
Target: 5'- gAACCUGGCCGACUUUUCGUGUUu--- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACGAcuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 10650 | 0.86 | 0.135045 |
Target: 5'- aAACCUGGCCGACUUUUCGUGUUu--- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACGAcuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 10574 | 0.82 | 0.235972 |
Target: 5'- gAACCUGGCCGACUUUUCGUGa----- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 25968 | 0.82 | 0.235972 |
Target: 5'- gAACCUGGCCGACUUUUCGUGa----- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 26048 | 0.82 | 0.242089 |
Target: 5'- aAACCUGGCCGACUUUUCGUGa----- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 76479 | 0.82 | 0.242089 |
Target: 5'- gAACCUGGCCGACUUUUCGuUGauuguaUGAAUa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGC-ACg-----ACUUA- -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 104516 | 0.8 | 0.303193 |
Target: 5'- gAACCUGGCCGACUUUUCGU--UGAc- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgACUua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 112569 | 0.8 | 0.303193 |
Target: 5'- gAACCUGGCCGACUUUUCGU--UGAc- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgACUua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 42895 | 0.79 | 0.366908 |
Target: 5'- gAACCUGGCCGACUUUUUGUGaauaUGu-- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACg---ACuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 121893 | 0.79 | 0.384213 |
Target: 5'- gAACCUGGCCGACUUUUCGUaCUu--- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcGAcuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 76352 | 0.78 | 0.420404 |
Target: 5'- gAACCUGGCCGACUUUUCGUa------ -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 67398 | 0.78 | 0.420404 |
Target: 5'- gAACCUGGCCGACUUUUCGUa------ -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 67210 | 0.77 | 0.44886 |
Target: 5'- gAACCUGGCCGACUUUUCGauauucauaacgUGUUGu-- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGC------------ACGACuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 104636 | 0.77 | 0.44886 |
Target: 5'- gAACCUGGCCGACUUUU--UGUUGAu- -3' miRNA: 3'- -UUGGACCGGCUGAAAAgcACGACUua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 67308 | 0.77 | 0.478349 |
Target: 5'- gAACCUGGCCGACUUUUCGauaaGCg---- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCa---CGacuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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