Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11651 | 5' | -52.1 | NC_003102.1 | + | 103480 | 0.91 | 0.067154 |
Target: 5'- gAACCUGGCCGACUUUUCGUGCUc--- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCACGAcuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 104350 | 0.7 | 0.855335 |
Target: 5'- gAACCUGGCCGACUUUUUaga-UGAc- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacgACUua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 25836 | 0.69 | 0.863452 |
Target: 5'- gAACgUGGCCGACUUUUCGUa------ -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCAcgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 26362 | 0.68 | 0.900411 |
Target: 5'- gAACgUGGCCGACUUUUCGaGaaagaUGAc- -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCaCg----ACUua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 54314 | 0.68 | 0.907041 |
Target: 5'- cAACUUGGCCGACUUUUcaaaguauaaaCGUGUUa--- -3' miRNA: 3'- -UUGGACCGGCUGAAAA-----------GCACGAcuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 103657 | 0.67 | 0.930911 |
Target: 5'- gAACCUGGCCGACUcUUCauaGaUUGAAa -3' miRNA: 3'- -UUGGACCGGCUGAaAAGca-C-GACUUa -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 56085 | 0.67 | 0.946014 |
Target: 5'- gAACCUGGCCGACUUUUUa-------- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 112472 | 0.67 | 0.950521 |
Target: 5'- gAACCUGGCUGACUUUUCa-------- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 104287 | 0.66 | 0.969277 |
Target: 5'- uAACCUGGuuGACUUUUCGauaaGCc---- -3' miRNA: 3'- -UUGGACCggCUGAAAAGCa---CGacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 103539 | 0.71 | 0.811526 |
Target: 5'- aAACCUGGCCGACUUUUUGa------- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCacgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 103598 | 0.71 | 0.802181 |
Target: 5'- gAACCUGGCCGACUUUUUGa------- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCacgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 55993 | 0.71 | 0.792663 |
Target: 5'- gAACCUGGCCGACUUUUCa-------- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGcacgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 76479 | 0.82 | 0.242089 |
Target: 5'- gAACCUGGCCGACUUUUCGuUGauuguaUGAAUa -3' miRNA: 3'- -UUGGACCGGCUGAAAAGC-ACg-----ACUUA- -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 104516 | 0.8 | 0.303193 |
Target: 5'- gAACCUGGCCGACUUUUCGU--UGAc- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgACUua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 112569 | 0.8 | 0.303193 |
Target: 5'- gAACCUGGCCGACUUUUCGU--UGAc- -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgACUua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 76352 | 0.78 | 0.420404 |
Target: 5'- gAACCUGGCCGACUUUUCGUa------ -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 104636 | 0.77 | 0.44886 |
Target: 5'- gAACCUGGCCGACUUUU--UGUUGAu- -3' miRNA: 3'- -UUGGACCGGCUGAAAAgcACGACUua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 36211 | 0.74 | 0.636466 |
Target: 5'- gAACCUGGCCGACUUUUUGUa------ -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 61379 | 0.74 | 0.647288 |
Target: 5'- aAACCUGGCCGACUUUUUGUa------ -3' miRNA: 3'- -UUGGACCGGCUGAAAAGCAcgacuua -5' |
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11651 | 5' | -52.1 | NC_003102.1 | + | 89508 | 0.71 | 0.767185 |
Target: 5'- gAACgUGGCUGACUUUUCGUagaaucugguggacaGUUGAAa -3' miRNA: 3'- -UUGgACCGGCUGAAAAGCA---------------CGACUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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