miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11652 5' -54.4 NC_003102.1 + 12993 0.66 0.948356
Target:  5'- gGGCACGCUGUACuuggGAUCGuGU--GUGAc -3'
miRNA:   3'- -CCGUGCGGCGUG----CUAGC-CAugUACUc -5'
11652 5' -54.4 NC_003102.1 + 131154 0.66 0.948356
Target:  5'- cGGCACGuaGCGCcGUCGGcugagcacguuuUGCAUGuAGc -3'
miRNA:   3'- -CCGUGCggCGUGcUAGCC------------AUGUAC-UC- -5'
11652 5' -54.4 NC_003102.1 + 91194 0.66 0.947493
Target:  5'- cGGC-CGCCGCucagaaucgucuCGAUCGaGUGCGUc-- -3'
miRNA:   3'- -CCGuGCGGCGu-----------GCUAGC-CAUGUAcuc -5'
11652 5' -54.4 NC_003102.1 + 6617 0.66 0.939295
Target:  5'- uGGCGCugccgagacuGCCGCugGcGUUGGUGCugcUGAu -3'
miRNA:   3'- -CCGUG----------CGGCGugC-UAGCCAUGu--ACUc -5'
11652 5' -54.4 NC_003102.1 + 77893 0.66 0.939295
Target:  5'- cGGCG-GCCGUACGAUUauuGUAaAUGAGa -3'
miRNA:   3'- -CCGUgCGGCGUGCUAGc--CAUgUACUC- -5'
11652 5' -54.4 NC_003102.1 + 96159 0.67 0.92927
Target:  5'- ---uCGCUGUACGAUCGG-AC-UGAGa -3'
miRNA:   3'- ccguGCGGCGUGCUAGCCaUGuACUC- -5'
11652 5' -54.4 NC_003102.1 + 23970 0.67 0.92927
Target:  5'- uGCGCGUCGC-C-AUCGGUAUAcacgGAGa -3'
miRNA:   3'- cCGUGCGGCGuGcUAGCCAUGUa---CUC- -5'
11652 5' -54.4 NC_003102.1 + 66527 0.67 0.912413
Target:  5'- cGCACuGCUGCGCGAU-GGUggGCAUGc- -3'
miRNA:   3'- cCGUG-CGGCGUGCUAgCCA--UGUACuc -5'
11652 5' -54.4 NC_003102.1 + 120972 0.69 0.824336
Target:  5'- cGGCGCGaCCgGCACGAaaUUGGUAuCGUGu- -3'
miRNA:   3'- -CCGUGC-GG-CGUGCU--AGCCAU-GUACuc -5'
11652 5' -54.4 NC_003102.1 + 23266 0.69 0.824336
Target:  5'- cGGcCAgGCCGgGCGAuugcaUCGGacACAUGAGa -3'
miRNA:   3'- -CC-GUgCGGCgUGCU-----AGCCa-UGUACUC- -5'
11652 5' -54.4 NC_003102.1 + 17456 1.11 0.0029
Target:  5'- gGGCACGCCGCACGAUCGGUACAUGAGa -3'
miRNA:   3'- -CCGUGCGGCGUGCUAGCCAUGUACUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.