miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11653 3' -55.8 NC_003102.1 + 133740 0.69 0.753905
Target:  5'- cCGCGUCGcAGcCGCCguaGUGUCGcCGCa- -3'
miRNA:   3'- aGCGCAGC-UC-GCGG---UACAGUuGCGcg -5'
11653 3' -55.8 NC_003102.1 + 93548 0.7 0.72371
Target:  5'- uUCGUGUcuguacaCGAGCaCCGUGUCgAAUGUGCc -3'
miRNA:   3'- -AGCGCA-------GCUCGcGGUACAG-UUGCGCG- -5'
11653 3' -55.8 NC_003102.1 + 17482 0.7 0.704812
Target:  5'- aUCGCGUCG-GCgGgUAUGUCGaugGCGgGCa -3'
miRNA:   3'- -AGCGCAGCuCG-CgGUACAGU---UGCgCG- -5'
11653 3' -55.8 NC_003102.1 + 1274 0.71 0.674548
Target:  5'- aUCGCGUCGAGCGUgauagccgaaagCAgcgagGUCAuacgaaacaACGCGg -3'
miRNA:   3'- -AGCGCAGCUCGCG------------GUa----CAGU---------UGCGCg -5'
11653 3' -55.8 NC_003102.1 + 127179 0.71 0.664379
Target:  5'- uUCGCGgccacguccauUCGaAGCGCCA-GUCuGCGCGg -3'
miRNA:   3'- -AGCGC-----------AGC-UCGCGGUaCAGuUGCGCg -5'
11653 3' -55.8 NC_003102.1 + 128583 0.71 0.643972
Target:  5'- gCGCGUUGAGCGCgCuagacaGACGCGUc -3'
miRNA:   3'- aGCGCAGCUCGCG-Guacag-UUGCGCG- -5'
11653 3' -55.8 NC_003102.1 + 20124 0.99 0.013433
Target:  5'- cUCGCGUCGAGCGCCAUGUacACGCGCg -3'
miRNA:   3'- -AGCGCAGCUCGCGGUACAguUGCGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.