miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11653 5' -49.6 NC_003102.1 + 20090 1.12 0.007679
Target:  5'- uUCACGCGUACACCGAACGACACAAUCg -3'
miRNA:   3'- -AGUGCGCAUGUGGCUUGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 23806 0.79 0.616914
Target:  5'- cUC-CGUGUAUACCGAugGCGACGCGcAUCa -3'
miRNA:   3'- -AGuGCGCAUGUGGCU--UGCUGUGU-UAG- -5'
11653 5' -49.6 NC_003102.1 + 128206 0.75 0.782918
Target:  5'- gCACGUGUACgaAUCGGggucuaaaaACGGCACGAUCa -3'
miRNA:   3'- aGUGCGCAUG--UGGCU---------UGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 59418 0.73 0.892328
Target:  5'- --uUGUGUGCGCCGA-CGGCGCuuUCg -3'
miRNA:   3'- aguGCGCAUGUGGCUuGCUGUGuuAG- -5'
11653 5' -49.6 NC_003102.1 + 73937 0.72 0.912111
Target:  5'- aUCACGCGUG-ACCGuucacGACGACACcGUg -3'
miRNA:   3'- -AGUGCGCAUgUGGC-----UUGCUGUGuUAg -5'
11653 5' -49.6 NC_003102.1 + 96979 0.72 0.924014
Target:  5'- cCACGCGUACAUCGGA-GACAg---- -3'
miRNA:   3'- aGUGCGCAUGUGGCUUgCUGUguuag -5'
11653 5' -49.6 NC_003102.1 + 69579 0.71 0.934874
Target:  5'- -aACGUGUACAUUGAACGGCAa---- -3'
miRNA:   3'- agUGCGCAUGUGGCUUGCUGUguuag -5'
11653 5' -49.6 NC_003102.1 + 123598 0.71 0.939914
Target:  5'- gCGCGCGcACACCGcGAUGAauuaCACAGUUg -3'
miRNA:   3'- aGUGCGCaUGUGGC-UUGCU----GUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 40506 0.71 0.944695
Target:  5'- -aACGCGaucaccaugaUGcCGCCGAACGGCGCGuUCg -3'
miRNA:   3'- agUGCGC----------AU-GUGGCUUGCUGUGUuAG- -5'
11653 5' -49.6 NC_003102.1 + 65574 0.71 0.944695
Target:  5'- cCACGCuucgGUACauGCCGggUaugGGCGCAAUCa -3'
miRNA:   3'- aGUGCG----CAUG--UGGCuuG---CUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 43469 0.7 0.953492
Target:  5'- uUCugGaCGUACACCu--CGGCACGAg- -3'
miRNA:   3'- -AGugC-GCAUGUGGcuuGCUGUGUUag -5'
11653 5' -49.6 NC_003102.1 + 27772 0.7 0.961293
Target:  5'- aUACGCucACGCCGGACGugAuCGAUUg -3'
miRNA:   3'- aGUGCGcaUGUGGCUUGCugU-GUUAG- -5'
11653 5' -49.6 NC_003102.1 + 42331 0.69 0.974075
Target:  5'- aUCACGgGcACACCcGGCG-UACAAUCg -3'
miRNA:   3'- -AGUGCgCaUGUGGcUUGCuGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 6875 0.69 0.974075
Target:  5'- -aGCGCcaACACCGGcggcaGCGGCACcAUCg -3'
miRNA:   3'- agUGCGcaUGUGGCU-----UGCUGUGuUAG- -5'
11653 5' -49.6 NC_003102.1 + 40921 0.69 0.981413
Target:  5'- ---aGCGUACGCCGccuCGGCAUuuguGUCg -3'
miRNA:   3'- agugCGCAUGUGGCuu-GCUGUGu---UAG- -5'
11653 5' -49.6 NC_003102.1 + 114367 0.69 0.981413
Target:  5'- aUCGCGCGacuacaagAUAUCGGuuagaGACGCGAUCg -3'
miRNA:   3'- -AGUGCGCa-------UGUGGCUug---CUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 130138 0.68 0.983474
Target:  5'- gUCAUGCGgcgGCGCCGAAgaaGACAaauuguacaAGUCu -3'
miRNA:   3'- -AGUGCGCa--UGUGGCUUg--CUGUg--------UUAG- -5'
11653 5' -49.6 NC_003102.1 + 15699 0.68 0.983474
Target:  5'- aCGuCGCG-ACGCCGA-CGagucGCGCGAUCg -3'
miRNA:   3'- aGU-GCGCaUGUGGCUuGC----UGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 100770 0.68 0.983474
Target:  5'- cUACGgGaggACGCgUGAugGGCGCGAUCa -3'
miRNA:   3'- aGUGCgCa--UGUG-GCUugCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 32958 0.68 0.985357
Target:  5'- -aGCGcCGUaACGCCGAuauaguACGGCACuuUCa -3'
miRNA:   3'- agUGC-GCA-UGUGGCU------UGCUGUGuuAG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.