miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11653 5' -49.6 NC_003102.1 + 636 0.67 0.995152
Target:  5'- gUACGUGgGCACCGAcuCGGCugAAg- -3'
miRNA:   3'- aGUGCGCaUGUGGCUu-GCUGugUUag -5'
11653 5' -49.6 NC_003102.1 + 5803 0.66 0.995857
Target:  5'- gCcCGCGUGauuCCGGucACGuACGCAGUCg -3'
miRNA:   3'- aGuGCGCAUgu-GGCU--UGC-UGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 6875 0.69 0.974075
Target:  5'- -aGCGCcaACACCGGcggcaGCGGCACcAUCg -3'
miRNA:   3'- agUGCGcaUGUGGCU-----UGCUGUGuUAG- -5'
11653 5' -49.6 NC_003102.1 + 14822 0.68 0.987072
Target:  5'- uUUAC-CGUaaaGCACCGGACGAuCGCAcgCc -3'
miRNA:   3'- -AGUGcGCA---UGUGGCUUGCU-GUGUuaG- -5'
11653 5' -49.6 NC_003102.1 + 15699 0.68 0.983474
Target:  5'- aCGuCGCG-ACGCCGA-CGagucGCGCGAUCg -3'
miRNA:   3'- aGU-GCGCaUGUGGCUuGC----UGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 18040 0.66 0.996476
Target:  5'- gUCGgGCGUGCuaUGAACGGgACGAUUc -3'
miRNA:   3'- -AGUgCGCAUGugGCUUGCUgUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 19357 0.67 0.992436
Target:  5'- gUCGCcGgGUACACaagCGucguccucAACGACGCGAUCa -3'
miRNA:   3'- -AGUG-CgCAUGUG---GC--------UUGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 19960 0.66 0.996476
Target:  5'- -gGCGUGUACAUggCGcuCGACGCGAg- -3'
miRNA:   3'- agUGCGCAUGUG--GCuuGCUGUGUUag -5'
11653 5' -49.6 NC_003102.1 + 20090 1.12 0.007679
Target:  5'- uUCACGCGUACACCGAACGACACAAUCg -3'
miRNA:   3'- -AGUGCGCAUGUGGCUUGCUGUGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 21333 0.68 0.985357
Target:  5'- -uGCGCGUACGCCu-GCGGCguguccGCGGUUu -3'
miRNA:   3'- agUGCGCAUGUGGcuUGCUG------UGUUAG- -5'
11653 5' -49.6 NC_003102.1 + 23806 0.79 0.616914
Target:  5'- cUC-CGUGUAUACCGAugGCGACGCGcAUCa -3'
miRNA:   3'- -AGuGCGCAUGUGGCU--UGCUGUGU-UAG- -5'
11653 5' -49.6 NC_003102.1 + 25079 0.66 0.996476
Target:  5'- -aACGCaGUACAUgGAacACGACAUAAa- -3'
miRNA:   3'- agUGCG-CAUGUGgCU--UGCUGUGUUag -5'
11653 5' -49.6 NC_003102.1 + 27772 0.7 0.961293
Target:  5'- aUACGCucACGCCGGACGugAuCGAUUg -3'
miRNA:   3'- aGUGCGcaUGUGGCUUGCugU-GUUAG- -5'
11653 5' -49.6 NC_003102.1 + 30871 0.67 0.992436
Target:  5'- -gACGCGUuCGCCGAGCuAgGCAAg- -3'
miRNA:   3'- agUGCGCAuGUGGCUUGcUgUGUUag -5'
11653 5' -49.6 NC_003102.1 + 32958 0.68 0.985357
Target:  5'- -aGCGcCGUaACGCCGAuauaguACGGCACuuUCa -3'
miRNA:   3'- agUGC-GCA-UGUGGCU------UGCUGUGuuAG- -5'
11653 5' -49.6 NC_003102.1 + 33246 0.68 0.988627
Target:  5'- -aAUGCGUGCACgauGAUGACACAAa- -3'
miRNA:   3'- agUGCGCAUGUGgc-UUGCUGUGUUag -5'
11653 5' -49.6 NC_003102.1 + 34425 0.68 0.990034
Target:  5'- -gACGCGUGCA--GAACGAUAacgaGAUCa -3'
miRNA:   3'- agUGCGCAUGUggCUUGCUGUg---UUAG- -5'
11653 5' -49.6 NC_003102.1 + 40506 0.71 0.944695
Target:  5'- -aACGCGaucaccaugaUGcCGCCGAACGGCGCGuUCg -3'
miRNA:   3'- agUGCGC----------AU-GUGGCUUGCUGUGUuAG- -5'
11653 5' -49.6 NC_003102.1 + 40921 0.69 0.981413
Target:  5'- ---aGCGUACGCCGccuCGGCAUuuguGUCg -3'
miRNA:   3'- agugCGCAUGUGGCuu-GCUGUGu---UAG- -5'
11653 5' -49.6 NC_003102.1 + 41130 0.68 0.987072
Target:  5'- gCACGUuUACuaaaugaCGGAUGGCGCGAUCg -3'
miRNA:   3'- aGUGCGcAUGug-----GCUUGCUGUGUUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.