Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11654 | 3' | -48.7 | NC_003102.1 | + | 10409 | 0.75 | 0.798403 |
Target: 5'- uGGCCUc---ACGAAAAGUCGGCCAgGu -3' miRNA: 3'- -UUGGAcaaaUGCUUUUCAGCCGGUgC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 10483 | 0.71 | 0.957746 |
Target: 5'- uGGCUUaaacACGAAAAGUCGGCCAgGu -3' miRNA: 3'- -UUGGAcaaaUGCUUUUCAGCCGGUgC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 10574 | 0.68 | 0.989042 |
Target: 5'- --------cACGAAAAGUCGGCCAgGu -3' miRNA: 3'- uuggacaaaUGCUUUUCAGCCGGUgC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 10648 | 0.72 | 0.934696 |
Target: 5'- uGACUUaagcACGAAAAGUCGGCCAgGu -3' miRNA: 3'- -UUGGAcaaaUGCUUUUCAGCCGGUgC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 10686 | 0.67 | 0.993787 |
Target: 5'- aAGCCaUGUcUACGAAAAGUCaGaCACGu -3' miRNA: 3'- -UUGG-ACAaAUGCUUUUCAGcCgGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 25788 | 0.75 | 0.835167 |
Target: 5'- uGACUuuUGUUUgaguauugaucACGAAAAGUCGGCCAgGu -3' miRNA: 3'- -UUGG--ACAAA-----------UGCUUUUCAGCCGGUgC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 25870 | 0.69 | 0.979609 |
Target: 5'- uGACUUuUUUaaguauugaucACGAAAAGUCGGCCAgGu -3' miRNA: 3'- -UUGGAcAAA-----------UGCUUUUCAGCCGGUgC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 26003 | 1.07 | 0.017633 |
Target: 5'- uAACCUGUUUACGAAAAGUCGGCCACGu -3' miRNA: 3'- -UUGGACAAAUGCUUUUCAGCCGGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 26022 | 0.71 | 0.957746 |
Target: 5'- uGGCUUaagcACGAAAAGUCGGCCAgGu -3' miRNA: 3'- -UUGGAcaaaUGCUUUUCAGCCGGUgC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 26099 | 0.71 | 0.957746 |
Target: 5'- uGGCUUaaacACGAAAAGUCGGCCAgGu -3' miRNA: 3'- -UUGGAcaaaUGCUUUUCAGCCGGUgC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 26528 | 0.75 | 0.835167 |
Target: 5'- cAUCUuucu-CGAAAAGUCGGCCACGu -3' miRNA: 3'- uUGGAcaaauGCUUUUCAGCCGGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 29698 | 0.66 | 0.997686 |
Target: 5'- cGCCgcuuUGUaUACGcAAaaaccAAGUCGGCCGCa -3' miRNA: 3'- uUGG----ACAaAUGC-UU-----UUCAGCCGGUGc -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 31891 | 0.67 | 0.995443 |
Target: 5'- aAACUcGUUUACGAucGGUCGcGCC-CGc -3' miRNA: 3'- -UUGGaCAAAUGCUuuUCAGC-CGGuGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 32741 | 0.68 | 0.9875 |
Target: 5'- aAGCaUGUUUAUGAAAAG--GGCCGCGc -3' miRNA: 3'- -UUGgACAAAUGCUUUUCagCCGGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 35491 | 0.7 | 0.977157 |
Target: 5'- cGACCUGguagcCGAauccGAAGaCGGCCGCGu -3' miRNA: 3'- -UUGGACaaau-GCU----UUUCaGCCGGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 36066 | 0.76 | 0.788762 |
Target: 5'- ---aUGUacAUGAAAAGUCGGCCACGu -3' miRNA: 3'- uuggACAaaUGCUUUUCAGCCGGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 36176 | 0.68 | 0.99168 |
Target: 5'- aAACaUGUUUGCuAAAAGUCGGaCACGu -3' miRNA: 3'- -UUGgACAAAUGcUUUUCAGCCgGUGC- -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 42428 | 0.66 | 0.998683 |
Target: 5'- aGACUgcgGUagcgUACGAAAAGUUGGUgACu -3' miRNA: 3'- -UUGGa--CAa---AUGCUUUUCAGCCGgUGc -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 52206 | 0.66 | 0.997238 |
Target: 5'- cAGCUUGUguucagGCGA--AG-CGGCCACa -3' miRNA: 3'- -UUGGACAaa----UGCUuuUCaGCCGGUGc -5' |
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11654 | 3' | -48.7 | NC_003102.1 | + | 54629 | 0.68 | 0.99168 |
Target: 5'- aAACaUGUUUGCuAAAAGUCGGaCACGu -3' miRNA: 3'- -UUGgACAAAUGcUUUUCAGCCgGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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