miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11654 3' -48.7 NC_003102.1 + 56050 0.69 0.98186
Target:  5'- aAACaUGUUUACGAAAAGUCaGaCACGu -3'
miRNA:   3'- -UUGgACAAAUGCUUUUCAGcCgGUGC- -5'
11654 3' -48.7 NC_003102.1 + 10648 0.72 0.934696
Target:  5'- uGACUUaagcACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGAcaaaUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 121727 0.71 0.94471
Target:  5'- ----gGUUuaagUACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- uuggaCAA----AUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 97784 0.71 0.94471
Target:  5'- aGACggGUUugUACGAAAAGU-GGCCACGu -3'
miRNA:   3'- -UUGgaCAA--AUGCUUUUCAgCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 66947 0.71 0.949316
Target:  5'- --aUUGUgaUAUGAAAAGUCGGCCAgGu -3'
miRNA:   3'- uugGACAa-AUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 10483 0.71 0.957746
Target:  5'- uGGCUUaaacACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGAcaaaUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 26022 0.71 0.957746
Target:  5'- uGGCUUaagcACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGAcaaaUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 26099 0.71 0.957746
Target:  5'- uGGCUUaaacACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGAcaaaUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 25870 0.69 0.979609
Target:  5'- uGACUUuUUUaaguauugaucACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGAcAAA-----------UGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 103622 0.72 0.929286
Target:  5'- cGACaUGUUcACGAAAAGUCGGaCGCGu -3'
miRNA:   3'- -UUGgACAAaUGCUUUUCAGCCgGUGC- -5'
11654 3' -48.7 NC_003102.1 + 89312 0.73 0.904941
Target:  5'- uACaUGUUUaaccACGAAAAGUCGGCCGgGu -3'
miRNA:   3'- uUGgACAAA----UGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 25788 0.75 0.835167
Target:  5'- uGACUuuUGUUUgaguauugaucACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGG--ACAAA-----------UGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 97840 0.85 0.344664
Target:  5'- aGACggGUUugUACGAAAAGUCGGCCACGu -3'
miRNA:   3'- -UUGgaCAA--AUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 104606 0.85 0.344664
Target:  5'- ----aGUUUAUGAAAAGUCGGCCACGu -3'
miRNA:   3'- uuggaCAAAUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 97727 0.83 0.433463
Target:  5'- aGACagGUUugUACGAAAAGUCGGCCACGu -3'
miRNA:   3'- -UUGgaCAA--AUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 97677 0.81 0.534195
Target:  5'- ----cGUUcACGAAAAGUCGGCCACGu -3'
miRNA:   3'- uuggaCAAaUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 137024 0.77 0.706797
Target:  5'- uAACaUGUacACGAAAAGUUGGCCACGu -3'
miRNA:   3'- -UUGgACAaaUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 67231 0.77 0.748706
Target:  5'- uGACUUa-UUACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGAcaAAUGCUUUUCAGCCGGUgC- -5'
11654 3' -48.7 NC_003102.1 + 36066 0.76 0.788762
Target:  5'- ---aUGUacAUGAAAAGUCGGCCACGu -3'
miRNA:   3'- uuggACAaaUGCUUUUCAGCCGGUGC- -5'
11654 3' -48.7 NC_003102.1 + 10409 0.75 0.798403
Target:  5'- uGGCCUc---ACGAAAAGUCGGCCAgGu -3'
miRNA:   3'- -UUGGAcaaaUGCUUUUCAGCCGGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.