miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 3' -47.7 NC_003102.1 + 10581 1 0.054759
Target:  5'- uAGAAUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- -UCUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 10594 0.7 0.987179
Target:  5'- cGAAUCGAACgUGuCUGACUUUUcGUa -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 10655 0.79 0.691158
Target:  5'- -aAAUCaAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGcUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 10738 0.91 0.183471
Target:  5'- cGAuUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- uCUuAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 10821 0.86 0.364275
Target:  5'- uGAAUCuAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- uCUUAGcUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 23423 0.73 0.943369
Target:  5'- -cAAUCGcccGGCCUGGCCGACUguuacgGUg -3'
miRNA:   3'- ucUUAGC---UUGGACCGGCUGAaaaa--CA- -5'
11655 3' -47.7 NC_003102.1 + 25830 0.75 0.873698
Target:  5'- -cGAUCuGAACgUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAG-CUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 25973 0.92 0.16467
Target:  5'- -aGAUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 26053 0.8 0.647592
Target:  5'- -aGAUCaAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGcUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 26114 1.09 0.01647
Target:  5'- uAGAAUCGAACCUGGCCGACUUUUUGUg -3'
miRNA:   3'- -UCUUAGCUUGGACCGGCUGAAAAACA- -5'
11655 3' -47.7 NC_003102.1 + 26197 1 0.054759
Target:  5'- uAGAAUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- -UCUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 26272 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 26331 0.87 0.315357
Target:  5'- -aAAUCGAAUUUGGCCGACUUUUUGg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAACa -5'
11655 3' -47.7 NC_003102.1 + 26356 0.87 0.323154
Target:  5'- cGAAUCGAACgUGGCCGACUUUUcGa -3'
miRNA:   3'- uCUUAGCUUGgACCGGCUGAAAAaCa -5'
11655 3' -47.7 NC_003102.1 + 26501 0.72 0.952519
Target:  5'- cGAuUCGAACCUGGCUaACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGGACCGGcUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 26717 0.9 0.226809
Target:  5'- cGAAUCGAACgUGGCCGACUUUUUa- -3'
miRNA:   3'- uCUUAGCUUGgACCGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 36094 0.68 0.994534
Target:  5'- ---uUCGAACCUGuCUGACUUUUUa- -3'
miRNA:   3'- ucuuAGCUUGGACcGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 36206 1 0.058021
Target:  5'- -aAAUCGAACCUGGCCGACUUUUUGUa -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAACA- -5'
11655 3' -47.7 NC_003102.1 + 36236 0.86 0.355768
Target:  5'- cGAAUUGAACgUGGCCGACUUUUcaUGUa -3'
miRNA:   3'- uCUUAGCUUGgACCGGCUGAAAA--ACA- -5'
11655 3' -47.7 NC_003102.1 + 42591 0.8 0.614732
Target:  5'- -uAAUCGAACCUGGCCGACcgcaaacUUGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGaaa----AACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.