miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 3' -47.7 NC_003102.1 + 112647 0.72 0.964288
Target:  5'- cGAuUCGAACCUGuCUGACUUUUcGUg -3'
miRNA:   3'- uCUuAGCUUGGACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 26356 0.87 0.323154
Target:  5'- cGAAUCGAACgUGGCCGACUUUUcGa -3'
miRNA:   3'- uCUUAGCUUGgACCGGCUGAAAAaCa -5'
11655 3' -47.7 NC_003102.1 + 103534 0.85 0.399686
Target:  5'- -aAAUCaAACCUGGCCGACUUUUUGa -3'
miRNA:   3'- ucUUAGcUUGGACCGGCUGAAAAACa -5'
11655 3' -47.7 NC_003102.1 + 112466 0.84 0.446917
Target:  5'- cGAuUCGAACCUGGCUGACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 103652 0.83 0.497094
Target:  5'- -aAAUCGAACCUGGCCGACUc----- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAaaaaca -5'
11655 3' -47.7 NC_003102.1 + 42591 0.8 0.614732
Target:  5'- -uAAUCGAACCUGGCCGACcgcaaacUUGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGaaa----AACA- -5'
11655 3' -47.7 NC_003102.1 + 137156 0.75 0.857645
Target:  5'- uGAAUCGAACgC-GGCCGACUUUUc-- -3'
miRNA:   3'- uCUUAGCUUG-GaCCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 137233 0.75 0.857645
Target:  5'- uGAAUCGAACgC-GGCCGACUUUUc-- -3'
miRNA:   3'- uCUUAGCUUG-GaCCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 25830 0.75 0.873698
Target:  5'- -cGAUCuGAACgUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAG-CUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 104510 0.88 0.292823
Target:  5'- cGuuUCGAACCUGGCCGACUUUUcGUu -3'
miRNA:   3'- uCuuAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 55988 0.88 0.264762
Target:  5'- -aAAUCGAACCUGGCCGACUUUUc-- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 112563 0.9 0.215222
Target:  5'- cGAuUCGAACCUGGCCGACUUUUcGUu -3'
miRNA:   3'- uCUuAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 104344 0.99 0.067019
Target:  5'- cGAAUCGAACCUGGCCGACUUUUUa- -3'
miRNA:   3'- uCUUAGCUUGGACCGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 104631 0.99 0.068974
Target:  5'- -aAAUCGAACCUGGCCGACUUUUUGUu -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAACA- -5'
11655 3' -47.7 NC_003102.1 + 103593 0.97 0.084271
Target:  5'- -aAAUCGAACCUGGCCGACUUUUUGa -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAACa -5'
11655 3' -47.7 NC_003102.1 + 61373 0.95 0.114997
Target:  5'- cGAAUCaAACCUGGCCGACUUUUUGUa -3'
miRNA:   3'- uCUUAGcUUGGACCGGCUGAAAAACA- -5'
11655 3' -47.7 NC_003102.1 + 56080 0.92 0.160247
Target:  5'- -aGAUCGAACCUGGCCGACUUUUUa- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 76347 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 103475 0.91 0.183471
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 76474 0.9 0.215222
Target:  5'- -aAAUCGAACCUGGCCGACUUUUcGUu -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAAAAaCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.