miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 3' -47.7 NC_003102.1 + 26501 0.72 0.952519
Target:  5'- cGAuUCGAACCUGGCUaACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGGACCGGcUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 23423 0.73 0.943369
Target:  5'- -cAAUCGcccGGCCUGGCCGACUguuacgGUg -3'
miRNA:   3'- ucUUAGC---UUGGACCGGCUGAaaaa--CA- -5'
11655 3' -47.7 NC_003102.1 + 42592 0.73 0.933141
Target:  5'- uGAAUUGAACUUGuCCGACUUUUUa- -3'
miRNA:   3'- uCUUAGCUUGGACcGGCUGAAAAAca -5'
11655 3' -47.7 NC_003102.1 + 112610 0.73 0.933141
Target:  5'- cGAAUCGAACgUGuCCGACUUUUaGUu -3'
miRNA:   3'- uCUUAGCUUGgACcGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 76617 0.75 0.881357
Target:  5'- cGAuUUGAACgUGGCCGACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGgACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 104774 0.75 0.881357
Target:  5'- cGAuUUGAACgUGGCCGACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGgACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 25830 0.75 0.873698
Target:  5'- -cGAUCuGAACgUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAG-CUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 137233 0.75 0.857645
Target:  5'- uGAAUCGAACgC-GGCCGACUUUUc-- -3'
miRNA:   3'- uCUUAGCUUG-GaCCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 137156 0.75 0.857645
Target:  5'- uGAAUCGAACgC-GGCCGACUUUUc-- -3'
miRNA:   3'- uCUUAGCUUG-GaCCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 10655 0.79 0.691158
Target:  5'- -aAAUCaAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGcUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 26053 0.8 0.647592
Target:  5'- -aGAUCaAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGcUUGGACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 42591 0.8 0.614732
Target:  5'- -uAAUCGAACCUGGCCGACcgcaaacUUGUg -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGaaa----AACA- -5'
11655 3' -47.7 NC_003102.1 + 97901 0.83 0.497094
Target:  5'- -uGAUCGAACgUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 97958 0.83 0.497094
Target:  5'- -uGAUCGAACgUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 103652 0.83 0.497094
Target:  5'- -aAAUCGAACCUGGCCGACUc----- -3'
miRNA:   3'- ucUUAGCUUGGACCGGCUGAaaaaca -5'
11655 3' -47.7 NC_003102.1 + 97844 0.83 0.497094
Target:  5'- -uGAUCGAACgUGGCCGACUUUUcGUg -3'
miRNA:   3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 98015 0.83 0.497094
Target:  5'- -uGAUCGAACgUGGCCGACUUUUcGUa -3'
miRNA:   3'- ucUUAGCUUGgACCGGCUGAAAAaCA- -5'
11655 3' -47.7 NC_003102.1 + 112466 0.84 0.446917
Target:  5'- cGAuUCGAACCUGGCUGACUUUUc-- -3'
miRNA:   3'- uCUuAGCUUGGACCGGCUGAAAAaca -5'
11655 3' -47.7 NC_003102.1 + 103534 0.85 0.399686
Target:  5'- -aAAUCaAACCUGGCCGACUUUUUGa -3'
miRNA:   3'- ucUUAGcUUGGACCGGCUGAAAAACa -5'
11655 3' -47.7 NC_003102.1 + 10821 0.86 0.364275
Target:  5'- uGAAUCuAACCUGGCCGACUUUUcGUg -3'
miRNA:   3'- uCUUAGcUUGGACCGGCUGAAAAaCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.