miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 5' -43.9 NC_003102.1 + 26076 1.06 0.055276
Target:  5'- uCUACAAAAAGUCAGACACGUUCAGAUc -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUGCAAGUCUA- -5'
11655 5' -43.9 NC_003102.1 + 56058 1.03 0.08634
Target:  5'- uUACGAAAAGUCAGACACGUUCAGAUc -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUGCAAGUCUA- -5'
11655 5' -43.9 NC_003102.1 + 10678 0.95 0.239647
Target:  5'- uCUACGAAAAGUCAGACACGUUCAa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 121841 0.94 0.259568
Target:  5'- aCUACGAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 10760 0.94 0.259568
Target:  5'- aCUACGAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 55966 0.92 0.327417
Target:  5'- uUACGAAAAGUCAGACACGUUCAa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 67335 0.91 0.361535
Target:  5'- uUGCAAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 67425 0.91 0.361535
Target:  5'- uUGCAAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 25995 0.91 0.370442
Target:  5'- uUACGAAAAGUCGGcCACGUUCAGAUc -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUGCAAGUCUA- -5'
11655 5' -43.9 NC_003102.1 + 112625 0.9 0.388701
Target:  5'- aCUAUAAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 89599 0.9 0.388701
Target:  5'- uUACGAAAAGUCGGACACGUUCAa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 103513 0.9 0.417172
Target:  5'- -cGCGAAAAGUCAGACACGUUCAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 26293 0.89 0.44688
Target:  5'- -aACGAAAAGUCAGACACGUUCAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 26352 0.89 0.44688
Target:  5'- -aACGAAAAGUCAGACACGUUCAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 104324 0.87 0.520409
Target:  5'- -cACGAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 112543 0.87 0.520409
Target:  5'- -cACGAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 26737 0.87 0.520409
Target:  5'- -cACGAAAAGUCAGACACGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 103631 0.87 0.564504
Target:  5'- -cACGAAAAGUCGGACGCGUUCAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 67237 0.86 0.59821
Target:  5'- uUGCAAAAAGUCAGACACGUUU-GAa -3'
miRNA:   3'- gAUGUUUUUCAGUCUGUGCAAGuCUa -5'
11655 5' -43.9 NC_003102.1 + 89420 0.85 0.64353
Target:  5'- uCUAUGAAAAGUCAGACAUGUUCAa-- -3'
miRNA:   3'- -GAUGUUUUUCAGUCUGUGCAAGUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.