miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11655 5' -43.9 NC_003102.1 + 42737 0.68 0.99997
Target:  5'- -cACAAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 104794 0.68 0.99997
Target:  5'- -aACAAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 96426 0.68 0.99997
Target:  5'- -gGCGAuuccAAAGUgAGACGCGUUCGa-- -3'
miRNA:   3'- gaUGUU----UUUCAgUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 54989 0.68 0.999959
Target:  5'- -cACAAAAAGUCuaACAUGUUCAuGAa -3'
miRNA:   3'- gaUGUUUUUCAGucUGUGCAAGU-CUa -5'
11655 5' -43.9 NC_003102.1 + 55021 0.68 0.999959
Target:  5'- -cACAAAAAGUCuaACAUGUUCAuGAa -3'
miRNA:   3'- gaUGUUUUUCAGucUGUGCAAGU-CUa -5'
11655 5' -43.9 NC_003102.1 + 55053 0.68 0.999959
Target:  5'- -cACAAAAAGUCuaACAUGUUCAuGAa -3'
miRNA:   3'- gaUGUUUUUCAGucUGUGCAAGU-CUa -5'
11655 5' -43.9 NC_003102.1 + 25948 0.68 0.999959
Target:  5'- -gACAAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 113129 0.69 0.999925
Target:  5'- gUACaAGAGAGUCAGAaACGUcgCGGAc -3'
miRNA:   3'- gAUG-UUUUUCAGUCUgUGCAa-GUCUa -5'
11655 5' -43.9 NC_003102.1 + 137033 0.69 0.999867
Target:  5'- -cACGAAAAGUUGGcCACGUUCGa-- -3'
miRNA:   3'- gaUGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 121734 0.7 0.999708
Target:  5'- gUACGAAAAGUCGGcCAgGUUCGu-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 26522 0.7 0.999626
Target:  5'- uCU-CGAAAAGUCGGcCACGUUCGa-- -3'
miRNA:   3'- -GAuGUUUUUCAGUCuGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 10500 0.7 0.999626
Target:  5'- uUACGAcAAGUCAGACGUGUUCGc-- -3'
miRNA:   3'- gAUGUUuUUCAGUCUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 76511 0.7 0.999525
Target:  5'- uUACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 67238 0.7 0.999525
Target:  5'- uUACGAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 47270 0.7 0.999454
Target:  5'- -cGCGAAAuAGUCAGGCGCGUUUuuaaauauaacaaauGGGUg -3'
miRNA:   3'- gaUGUUUU-UCAGUCUGUGCAAG---------------UCUA- -5'
11655 5' -43.9 NC_003102.1 + 36371 0.71 0.999067
Target:  5'- uUACAAAAAGUCGGcCAgGUUCGa-- -3'
miRNA:   3'- gAUGUUUUUCAGUCuGUgCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 54958 0.71 0.998846
Target:  5'- uUACAAAAAGUCuaACAUGUUCAuGAa -3'
miRNA:   3'- gAUGUUUUUCAGucUGUGCAAGU-CUa -5'
11655 5' -43.9 NC_003102.1 + 98036 0.71 0.998583
Target:  5'- -cAUGAAAAGUCAGACAaGUUguGAUc -3'
miRNA:   3'- gaUGUUUUUCAGUCUGUgCAAguCUA- -5'
11655 5' -43.9 NC_003102.1 + 10906 0.71 0.998271
Target:  5'- -cACAAAAAGUCAuACAUGUUCAa-- -3'
miRNA:   3'- gaUGUUUUUCAGUcUGUGCAAGUcua -5'
11655 5' -43.9 NC_003102.1 + 133388 0.72 0.997471
Target:  5'- aUGCAAGuuGGUCAGcgauuuaugaACAUGUUCAGAa -3'
miRNA:   3'- gAUGUUUu-UCAGUC----------UGUGCAAGUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.