miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11657 3' -49.1 NC_003102.1 + 104315 1.1 0.012129
Target:  5'- cGACACGUCCACGAAAAGUCAGACACGu -3'
miRNA:   3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 26746 1.1 0.012129
Target:  5'- cGACACGUCCACGAAAAGUCAGACACGu -3'
miRNA:   3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 137127 1.06 0.021008
Target:  5'- aGACAUGUCCACGAAAAGUCAGACACGu -3'
miRNA:   3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 103563 1.05 0.022905
Target:  5'- cGACAUGUCCGCGAAAAGUCAGACACGu -3'
miRNA:   3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 137205 1.01 0.039513
Target:  5'- aACAUGUCCACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 137282 1.01 0.039513
Target:  5'- aACAUGUCCACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 112536 1 0.045568
Target:  5'- -uCGCGUCCACGAAAAGUCAGACACGu -3'
miRNA:   3'- cuGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 103622 0.98 0.064026
Target:  5'- cGACAUGUUCACGAAAAGUCGGACGCGu -3'
miRNA:   3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 103505 0.94 0.114878
Target:  5'- aACGUGUCCGCGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 10683 0.93 0.121338
Target:  5'- -cCAUGUCUACGAAAAGUCAGACACGu -3'
miRNA:   3'- cuGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 56051 0.91 0.158969
Target:  5'- aACAUGUUUACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 26302 0.89 0.201527
Target:  5'- cGACAUGUUaACGAAAAGUCAGACACGu -3'
miRNA:   3'- -CUGUGCAGgUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 89426 0.89 0.201527
Target:  5'- aACAUGUCUAUGAAAAGUCAGACAUGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 112819 0.88 0.235139
Target:  5'- cACAUGUUCACGAAAAGUCAGACAgGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUgC- -5'
11657 3' -49.1 NC_003102.1 + 26082 0.87 0.253646
Target:  5'- aACGCGUCUACaAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGGUGcUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 26360 0.85 0.355943
Target:  5'- aACAUGUUaACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGgUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 97675 0.81 0.524541
Target:  5'- --gACGUUCACGAAAAGUCGGcCACGu -3'
miRNA:   3'- cugUGCAGGUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 10766 0.81 0.545293
Target:  5'- aACcCGaCUACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGuGCaGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 42564 0.79 0.608868
Target:  5'- --aAUGUUCACGAAAAGUCAGACAa- -3'
miRNA:   3'- cugUGCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 112617 0.79 0.619577
Target:  5'- ----aGUCCACGAcuauaaAAAGUCAGACACGu -3'
miRNA:   3'- cugugCAGGUGCU------UUUCAGUCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.