miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11657 3' -49.1 NC_003102.1 + 10683 0.93 0.121338
Target:  5'- -cCAUGUCUACGAAAAGUCAGACACGu -3'
miRNA:   3'- cuGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 10766 0.81 0.545293
Target:  5'- aACcCGaCUACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGuGCaGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 10848 0.74 0.865045
Target:  5'- aACA-GUUCAUGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGUgCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 10914 0.67 0.995462
Target:  5'- aACAUGUUCACaAAAAGUCAuACAUGu -3'
miRNA:   3'- cUGUGCAGGUGcUUUUCAGUcUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 19988 0.68 0.993749
Target:  5'- -cCGCGcCCACGAgcgugaucucgucAAAaUCGGACACGg -3'
miRNA:   3'- cuGUGCaGGUGCU-------------UUUcAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 20787 0.7 0.977695
Target:  5'- cGACuACGaCgACGAcGAGUUGGACGCGa -3'
miRNA:   3'- -CUG-UGCaGgUGCUuUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 26002 0.71 0.954999
Target:  5'- aACcUGUUUACGAAAAGUCGGcCACGu -3'
miRNA:   3'- cUGuGCAGGUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 26082 0.87 0.253646
Target:  5'- aACGCGUCUACaAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGGUGcUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 26141 0.72 0.931473
Target:  5'- aACcCGaCUACGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGuGCaGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 26224 0.72 0.931473
Target:  5'- aACcCGaCUACGAAAAGUCAGACAa- -3'
miRNA:   3'- cUGuGCaGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 26302 0.89 0.201527
Target:  5'- cGACAUGUUaACGAAAAGUCAGACACGu -3'
miRNA:   3'- -CUGUGCAGgUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 26360 0.85 0.355943
Target:  5'- aACAUGUUaACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGgUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 26533 0.67 0.997228
Target:  5'- --uGCGUCaucuuucuCGAAAAGUCGGcCACGu -3'
miRNA:   3'- cugUGCAGgu------GCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 26746 1.1 0.012129
Target:  5'- cGACACGUCCACGAAAAGUCAGACACGu -3'
miRNA:   3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 26928 0.71 0.954999
Target:  5'- aACAUGUUUACGAAAAGUCA--UACGg -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUcuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 26973 0.67 0.997228
Target:  5'- aACAUGUUCAUGAAAAGUCca--ACGg -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGucugUGC- -5'
11657 3' -49.1 NC_003102.1 + 27057 0.75 0.813902
Target:  5'- aACAUGUUCACGAAAAGUCA--UACGg -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUcuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 28301 0.66 0.998662
Target:  5'- uGAUACGUCUGCGGAucGUgGuGCACc -3'
miRNA:   3'- -CUGUGCAGGUGCUUuuCAgUcUGUGc -5'
11657 3' -49.1 NC_003102.1 + 31252 0.67 0.996131
Target:  5'- cGGCGuCaUCUACGAGagcgucGAGUUGGACACGa -3'
miRNA:   3'- -CUGU-GcAGGUGCUU------UUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 33506 0.78 0.662429
Target:  5'- cACACGUCCACGAcucuGAGUUuGACACc -3'
miRNA:   3'- cUGUGCAGGUGCUu---UUCAGuCUGUGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.