Results 1 - 20 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11657 | 3' | -49.1 | NC_003102.1 | + | 10683 | 0.93 | 0.121338 |
Target: 5'- -cCAUGUCUACGAAAAGUCAGACACGu -3' miRNA: 3'- cuGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 10766 | 0.81 | 0.545293 |
Target: 5'- aACcCGaCUACGAAAAGUCAGACACGu -3' miRNA: 3'- cUGuGCaGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 10848 | 0.74 | 0.865045 |
Target: 5'- aACA-GUUCAUGAAAAGUCAGACAa- -3' miRNA: 3'- cUGUgCAGGUGCUUUUCAGUCUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 10914 | 0.67 | 0.995462 |
Target: 5'- aACAUGUUCACaAAAAGUCAuACAUGu -3' miRNA: 3'- cUGUGCAGGUGcUUUUCAGUcUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 19988 | 0.68 | 0.993749 |
Target: 5'- -cCGCGcCCACGAgcgugaucucgucAAAaUCGGACACGg -3' miRNA: 3'- cuGUGCaGGUGCU-------------UUUcAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 20787 | 0.7 | 0.977695 |
Target: 5'- cGACuACGaCgACGAcGAGUUGGACGCGa -3' miRNA: 3'- -CUG-UGCaGgUGCUuUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26002 | 0.71 | 0.954999 |
Target: 5'- aACcUGUUUACGAAAAGUCGGcCACGu -3' miRNA: 3'- cUGuGCAGGUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26082 | 0.87 | 0.253646 |
Target: 5'- aACGCGUCUACaAAAAGUCAGACACGu -3' miRNA: 3'- cUGUGCAGGUGcUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26141 | 0.72 | 0.931473 |
Target: 5'- aACcCGaCUACGAAAAGUCAGACAa- -3' miRNA: 3'- cUGuGCaGGUGCUUUUCAGUCUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26224 | 0.72 | 0.931473 |
Target: 5'- aACcCGaCUACGAAAAGUCAGACAa- -3' miRNA: 3'- cUGuGCaGGUGCUUUUCAGUCUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26302 | 0.89 | 0.201527 |
Target: 5'- cGACAUGUUaACGAAAAGUCAGACACGu -3' miRNA: 3'- -CUGUGCAGgUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26360 | 0.85 | 0.355943 |
Target: 5'- aACAUGUUaACGAAAAGUCAGACACGu -3' miRNA: 3'- cUGUGCAGgUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26533 | 0.67 | 0.997228 |
Target: 5'- --uGCGUCaucuuucuCGAAAAGUCGGcCACGu -3' miRNA: 3'- cugUGCAGgu------GCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26746 | 1.1 | 0.012129 |
Target: 5'- cGACACGUCCACGAAAAGUCAGACACGu -3' miRNA: 3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26928 | 0.71 | 0.954999 |
Target: 5'- aACAUGUUUACGAAAAGUCA--UACGg -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGUcuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 26973 | 0.67 | 0.997228 |
Target: 5'- aACAUGUUCAUGAAAAGUCca--ACGg -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGucugUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 27057 | 0.75 | 0.813902 |
Target: 5'- aACAUGUUCACGAAAAGUCA--UACGg -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGUcuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 28301 | 0.66 | 0.998662 |
Target: 5'- uGAUACGUCUGCGGAucGUgGuGCACc -3' miRNA: 3'- -CUGUGCAGGUGCUUuuCAgUcUGUGc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 31252 | 0.67 | 0.996131 |
Target: 5'- cGGCGuCaUCUACGAGagcgucGAGUUGGACACGa -3' miRNA: 3'- -CUGU-GcAGGUGCUU------UUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 33506 | 0.78 | 0.662429 |
Target: 5'- cACACGUCCACGAcucuGAGUUuGACACc -3' miRNA: 3'- cUGUGCAGGUGCUu---UUCAGuCUGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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