Results 1 - 20 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11657 | 3' | -49.1 | NC_003102.1 | + | 89401 | 0.72 | 0.920241 |
Target: 5'- uACuuGUUuaaaaCAUGAAAAGUCAGACACGu -3' miRNA: 3'- cUGugCAG-----GUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 55960 | 0.78 | 0.662429 |
Target: 5'- uAUAUGUU-ACGAAAAGUCAGACACGu -3' miRNA: 3'- cUGUGCAGgUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 69528 | 0.76 | 0.776074 |
Target: 5'- cGACgACGUCCAUGAGcGAGUCgacAGACACu -3' miRNA: 3'- -CUG-UGCAGGUGCUU-UUCAG---UCUGUGc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 36177 | 0.76 | 0.795311 |
Target: 5'- aACAUGUuuGCuAAAAGUCGGACACGu -3' miRNA: 3'- cUGUGCAggUGcUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 104479 | 0.75 | 0.831768 |
Target: 5'- --aACGgucaacCCACGAAAAGUCuGACACGu -3' miRNA: 3'- cugUGCa-----GGUGCUUUUCAGuCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 97727 | 0.74 | 0.848838 |
Target: 5'- aGACAgGUUugUACGAAAAGUCGGcCACGu -3' miRNA: 3'- -CUGUgCAG--GUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 103442 | 0.74 | 0.872806 |
Target: 5'- uGGCGCaauaaCGuCGAAAAGUCAGACACGu -3' miRNA: 3'- -CUGUGcag--GU-GCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 112708 | 0.74 | 0.872806 |
Target: 5'- aACAUGUUUAUGAAAAGUCAGA-ACGa -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGUCUgUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 97840 | 0.73 | 0.901433 |
Target: 5'- aGACGgGUUugUACGAAAAGUCGGcCACGu -3' miRNA: 3'- -CUGUgCAG--GUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 112617 | 0.79 | 0.619577 |
Target: 5'- ----aGUCCACGAcuauaaAAAGUCAGACACGu -3' miRNA: 3'- cugugCAGGUGCU------UUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 42564 | 0.79 | 0.608868 |
Target: 5'- --aAUGUUCACGAAAAGUCAGACAa- -3' miRNA: 3'- cugUGCAGGUGCUUUUCAGUCUGUgc -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 97675 | 0.81 | 0.524541 |
Target: 5'- --gACGUUCACGAAAAGUCGGcCACGu -3' miRNA: 3'- cugUGCAGGUGCUUUUCAGUCuGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 137127 | 1.06 | 0.021008 |
Target: 5'- aGACAUGUCCACGAAAAGUCAGACACGu -3' miRNA: 3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 103563 | 1.05 | 0.022905 |
Target: 5'- cGACAUGUCCGCGAAAAGUCAGACACGu -3' miRNA: 3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 137205 | 1.01 | 0.039513 |
Target: 5'- aACAUGUCCACGAAAAGUCAGACACGu -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 137282 | 1.01 | 0.039513 |
Target: 5'- aACAUGUCCACGAAAAGUCAGACACGu -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 112536 | 1 | 0.045568 |
Target: 5'- -uCGCGUCCACGAAAAGUCAGACACGu -3' miRNA: 3'- cuGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 103622 | 0.98 | 0.064026 |
Target: 5'- cGACAUGUUCACGAAAAGUCGGACGCGu -3' miRNA: 3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 103505 | 0.94 | 0.114878 |
Target: 5'- aACGUGUCCGCGAAAAGUCAGACACGu -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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11657 | 3' | -49.1 | NC_003102.1 | + | 56051 | 0.91 | 0.158969 |
Target: 5'- aACAUGUUUACGAAAAGUCAGACACGu -3' miRNA: 3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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