miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11657 3' -49.1 NC_003102.1 + 89401 0.72 0.920241
Target:  5'- uACuuGUUuaaaaCAUGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGugCAG-----GUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 55960 0.78 0.662429
Target:  5'- uAUAUGUU-ACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGgUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 69528 0.76 0.776074
Target:  5'- cGACgACGUCCAUGAGcGAGUCgacAGACACu -3'
miRNA:   3'- -CUG-UGCAGGUGCUU-UUCAG---UCUGUGc -5'
11657 3' -49.1 NC_003102.1 + 36177 0.76 0.795311
Target:  5'- aACAUGUuuGCuAAAAGUCGGACACGu -3'
miRNA:   3'- cUGUGCAggUGcUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 104479 0.75 0.831768
Target:  5'- --aACGgucaacCCACGAAAAGUCuGACACGu -3'
miRNA:   3'- cugUGCa-----GGUGCUUUUCAGuCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 97727 0.74 0.848838
Target:  5'- aGACAgGUUugUACGAAAAGUCGGcCACGu -3'
miRNA:   3'- -CUGUgCAG--GUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 103442 0.74 0.872806
Target:  5'- uGGCGCaauaaCGuCGAAAAGUCAGACACGu -3'
miRNA:   3'- -CUGUGcag--GU-GCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 112708 0.74 0.872806
Target:  5'- aACAUGUUUAUGAAAAGUCAGA-ACGa -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUgUGC- -5'
11657 3' -49.1 NC_003102.1 + 97840 0.73 0.901433
Target:  5'- aGACGgGUUugUACGAAAAGUCGGcCACGu -3'
miRNA:   3'- -CUGUgCAG--GUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 112617 0.79 0.619577
Target:  5'- ----aGUCCACGAcuauaaAAAGUCAGACACGu -3'
miRNA:   3'- cugugCAGGUGCU------UUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 42564 0.79 0.608868
Target:  5'- --aAUGUUCACGAAAAGUCAGACAa- -3'
miRNA:   3'- cugUGCAGGUGCUUUUCAGUCUGUgc -5'
11657 3' -49.1 NC_003102.1 + 97675 0.81 0.524541
Target:  5'- --gACGUUCACGAAAAGUCGGcCACGu -3'
miRNA:   3'- cugUGCAGGUGCUUUUCAGUCuGUGC- -5'
11657 3' -49.1 NC_003102.1 + 137127 1.06 0.021008
Target:  5'- aGACAUGUCCACGAAAAGUCAGACACGu -3'
miRNA:   3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 103563 1.05 0.022905
Target:  5'- cGACAUGUCCGCGAAAAGUCAGACACGu -3'
miRNA:   3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 137205 1.01 0.039513
Target:  5'- aACAUGUCCACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 137282 1.01 0.039513
Target:  5'- aACAUGUCCACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 112536 1 0.045568
Target:  5'- -uCGCGUCCACGAAAAGUCAGACACGu -3'
miRNA:   3'- cuGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 103622 0.98 0.064026
Target:  5'- cGACAUGUUCACGAAAAGUCGGACGCGu -3'
miRNA:   3'- -CUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 103505 0.94 0.114878
Target:  5'- aACGUGUCCGCGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
11657 3' -49.1 NC_003102.1 + 56051 0.91 0.158969
Target:  5'- aACAUGUUUACGAAAAGUCAGACACGu -3'
miRNA:   3'- cUGUGCAGGUGCUUUUCAGUCUGUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.