miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11657 5' -50.2 NC_003102.1 + 14806 0.66 0.993266
Target:  5'- gGACGaucgcacGCCGGCgUUUUAcgaacuGAUGGCGCu -3'
miRNA:   3'- -UUGCac-----CGGCUGaAAAAU------CUACCGCG- -5'
11657 5' -50.2 NC_003102.1 + 58046 0.66 0.991042
Target:  5'- gAACGUGGCCG----------UGGCGCu -3'
miRNA:   3'- -UUGCACCGGCugaaaaaucuACCGCG- -5'
11657 5' -50.2 NC_003102.1 + 36230 0.66 0.98931
Target:  5'- gAACGUGGCCGACUUUUcauguacauuuacaUAGAa----- -3'
miRNA:   3'- -UUGCACCGGCUGAAAA--------------AUCUaccgcg -5'
11657 5' -50.2 NC_003102.1 + 133275 0.67 0.986665
Target:  5'- cAACcUGGCCGGCU-UUUAGAUuaCGCu -3'
miRNA:   3'- -UUGcACCGGCUGAaAAAUCUAccGCG- -5'
11657 5' -50.2 NC_003102.1 + 25836 0.67 0.986323
Target:  5'- gAACGUGGCCGACUUUUcguaaacaGGUu- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAaucua---CCGcg -5'
11657 5' -50.2 NC_003102.1 + 121956 0.68 0.975945
Target:  5'- gAACGUGGCCGACUUgUUUcGAUuacuaaaacGCGUu -3'
miRNA:   3'- -UUGCACCGGCUGAA-AAAuCUAc--------CGCG- -5'
11657 5' -50.2 NC_003102.1 + 85173 0.69 0.959969
Target:  5'- cAACGUGaCCGuuucgUUUUUUGGcUGGCGCa -3'
miRNA:   3'- -UUGCACcGGCu----GAAAAAUCuACCGCG- -5'
11657 5' -50.2 NC_003102.1 + 104636 0.69 0.956059
Target:  5'- gAACcUGGCCGACUUUUUGuuGAUuGUGUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAAU--CUAcCGCG- -5'
11657 5' -50.2 NC_003102.1 + 46724 0.69 0.956059
Target:  5'- cGACaUGGCCGAacu----GAUGGCGUg -3'
miRNA:   3'- -UUGcACCGGCUgaaaaauCUACCGCG- -5'
11657 5' -50.2 NC_003102.1 + 97839 0.69 0.956059
Target:  5'- gAACGUGGCCGACUUUUcgugaacgucaaUGuGUuaauuuguuaaGGUGCg -3'
miRNA:   3'- -UUGCACCGGCUGAAAA------------AUcUA-----------CCGCG- -5'
11657 5' -50.2 NC_003102.1 + 15893 0.7 0.942801
Target:  5'- -uCGUGGCCGAUUcgau-GGUGGCa- -3'
miRNA:   3'- uuGCACCGGCUGAaaaauCUACCGcg -5'
11657 5' -50.2 NC_003102.1 + 23703 0.71 0.888788
Target:  5'- -gUGUGGCgGGCg---UAGgcGGCGCg -3'
miRNA:   3'- uuGCACCGgCUGaaaaAUCuaCCGCG- -5'
11657 5' -50.2 NC_003102.1 + 39497 0.72 0.873936
Target:  5'- uGCGaUGGCCGAUUcggUUUgcgcgAGAcGGCGCg -3'
miRNA:   3'- uUGC-ACCGGCUGA---AAAa----UCUaCCGCG- -5'
11657 5' -50.2 NC_003102.1 + 17292 0.72 0.849864
Target:  5'- cGACGUGGCCGGCcuUUUUUAGAUuGUcCa -3'
miRNA:   3'- -UUGCACCGGCUG--AAAAAUCUAcCGcG- -5'
11657 5' -50.2 NC_003102.1 + 69535 0.78 0.586562
Target:  5'- cGACGUGGCCGAgUUUU----UGGUGCa -3'
miRNA:   3'- -UUGCACCGGCUgAAAAaucuACCGCG- -5'
11657 5' -50.2 NC_003102.1 + 89508 0.8 0.462478
Target:  5'- gAACGUGGCUGACUUUUcgUAGAaucUGGUGg -3'
miRNA:   3'- -UUGCACCGGCUGAAAA--AUCU---ACCGCg -5'
11657 5' -50.2 NC_003102.1 + 26362 0.83 0.337286
Target:  5'- gAACGUGGCCGACUUUUcgagaaAGAUGaCGCa -3'
miRNA:   3'- -UUGCACCGGCUGAAAAa-----UCUACcGCG- -5'
11657 5' -50.2 NC_003102.1 + 104350 0.86 0.226703
Target:  5'- gAACcUGGCCGACUUUUUAGAUGaCGCa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAAUCUACcGCG- -5'
11657 5' -50.2 NC_003102.1 + 26711 1.11 0.006138
Target:  5'- gAACGUGGCCGACUUUUUAGAUGGCGCa -3'
miRNA:   3'- -UUGCACCGGCUGAAAAAUCUACCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.