miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11658 3' -51.3 NC_003102.1 + 73831 0.73 0.813468
Target:  5'- aAGCGCAAC-AACgCCGAUAUG-CGACg -3'
miRNA:   3'- cUCGUGUUGcUUG-GGCUAUGCuGCUG- -5'
11658 3' -51.3 NC_003102.1 + 47358 0.74 0.746584
Target:  5'- cGGUACAACGGgaACgCCGAUuCGAUGACg -3'
miRNA:   3'- cUCGUGUUGCU--UG-GGCUAuGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 25630 0.66 0.988532
Target:  5'- gGAGCAaa--GAuuACgCCGAcgACGACGACa -3'
miRNA:   3'- -CUCGUguugCU--UG-GGCUa-UGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 60156 0.66 0.986981
Target:  5'- uGAGCaACGGCGAaaacaAUCUGAgcggaaGCGGCGAUa -3'
miRNA:   3'- -CUCG-UGUUGCU-----UGGGCUa-----UGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 82825 0.66 0.985275
Target:  5'- cGAGCGCucuaGAAC---GUACGACGACa -3'
miRNA:   3'- -CUCGUGuug-CUUGggcUAUGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 31650 0.66 0.984546
Target:  5'- aGAGUACGccGCGAuagcgggACCCGAUuauuuguacaacguGCG-CGACg -3'
miRNA:   3'- -CUCGUGU--UGCU-------UGGGCUA--------------UGCuGCUG- -5'
11658 3' -51.3 NC_003102.1 + 119699 0.67 0.979125
Target:  5'- cAGCGCAACaacGACUaagaCGAcgACGACGACg -3'
miRNA:   3'- cUCGUGUUGc--UUGG----GCUa-UGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 419 0.67 0.979125
Target:  5'- uAGCGCAgcACGcGCuCCGAUGCGAuccCGAg -3'
miRNA:   3'- cUCGUGU--UGCuUG-GGCUAUGCU---GCUg -5'
11658 3' -51.3 NC_003102.1 + 12385 0.68 0.963564
Target:  5'- cGGGCACcaacauggccuauACGAAUCCGuugaacGCGACGAUg -3'
miRNA:   3'- -CUCGUGu------------UGCUUGGGCua----UGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 127199 0.7 0.918935
Target:  5'- aAGCGCcagucugcGCGGAUCCGAUuCGACGAa -3'
miRNA:   3'- cUCGUGu-------UGCUUGGGCUAuGCUGCUg -5'
11658 3' -51.3 NC_003102.1 + 63642 0.7 0.918935
Target:  5'- cGGGCGCAGCGAggGCCU----CGAUGACu -3'
miRNA:   3'- -CUCGUGUUGCU--UGGGcuauGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 17037 0.71 0.879243
Target:  5'- -uGCGCAACaacuuuCCCGAUuCGGCGACc -3'
miRNA:   3'- cuCGUGUUGcuu---GGGCUAuGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 46436 0.71 0.864083
Target:  5'- ---gACGAgGAGCCCGGgaacgucgGCGGCGACg -3'
miRNA:   3'- cucgUGUUgCUUGGGCUa-------UGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 19191 0.72 0.856164
Target:  5'- uGAGgACGACGcuuguguACCCG--GCGACGACu -3'
miRNA:   3'- -CUCgUGUUGCu------UGGGCuaUGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 31863 1.11 0.005606
Target:  5'- cGAGCACAACGAACCCGAUACGACGACg -3'
miRNA:   3'- -CUCGUGUUGCUUGGGCUAUGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 82632 0.71 0.864083
Target:  5'- aGAGCAaCAGCGuGugCCGAaagUACGAgGGCa -3'
miRNA:   3'- -CUCGU-GUUGC-UugGGCU---AUGCUgCUG- -5'
11658 3' -51.3 NC_003102.1 + 73512 0.71 0.893461
Target:  5'- aGGCACGauuACGA--CCGAcgACGACGACg -3'
miRNA:   3'- cUCGUGU---UGCUugGGCUa-UGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 97061 0.7 0.9067
Target:  5'- --uUACGGCGAcaaaaaGCCgUGGUACGACGACa -3'
miRNA:   3'- cucGUGUUGCU------UGG-GCUAUGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 35604 0.7 0.912944
Target:  5'- ----uCAACGAGCUCGG-ACGACGACu -3'
miRNA:   3'- cucguGUUGCUUGGGCUaUGCUGCUG- -5'
11658 3' -51.3 NC_003102.1 + 27424 0.7 0.92467
Target:  5'- -uGUACAcauCGAACgguuCUGAUGCGGCGGCa -3'
miRNA:   3'- cuCGUGUu--GCUUG----GGCUAUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.