miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11659 3' -56 NC_003102.1 + 100147 0.66 0.914085
Target:  5'- -uUGGUCGC-AUCGUGGUcggcGACGGUCGc -3'
miRNA:   3'- auGCCAGCGcUGGUGCCA----UUGCCAGC- -5'
11659 3' -56 NC_003102.1 + 113006 0.66 0.895543
Target:  5'- gGCGGUgGUGGuguCgGCGGUGGCGG-Ca -3'
miRNA:   3'- aUGCCAgCGCU---GgUGCCAUUGCCaGc -5'
11659 3' -56 NC_003102.1 + 102035 0.66 0.895543
Target:  5'- aGCGG-CgGCGGugGCGGUGGCGG-CGg -3'
miRNA:   3'- aUGCCaG-CGCUggUGCCAUUGCCaGC- -5'
11659 3' -56 NC_003102.1 + 17744 0.67 0.882042
Target:  5'- gGCGG-CgGCGGCgGCGGUGcCGGUg- -3'
miRNA:   3'- aUGCCaG-CGCUGgUGCCAUuGCCAgc -5'
11659 3' -56 NC_003102.1 + 1660 0.67 0.874961
Target:  5'- -gUGGUgGCGGCgGCGGUAAaauuUGuGUCGg -3'
miRNA:   3'- auGCCAgCGCUGgUGCCAUU----GC-CAGC- -5'
11659 3' -56 NC_003102.1 + 119060 0.68 0.811087
Target:  5'- aGCGauagucGUCGUGAUCGCGGUGGCGugcuGUUGg -3'
miRNA:   3'- aUGC------CAGCGCUGGUGCCAUUGC----CAGC- -5'
11659 3' -56 NC_003102.1 + 72718 0.69 0.775067
Target:  5'- aACGGUgGUGGaaAUGGUAGCGG-CGg -3'
miRNA:   3'- aUGCCAgCGCUggUGCCAUUGCCaGC- -5'
11659 3' -56 NC_003102.1 + 114985 0.71 0.657199
Target:  5'- aACGG-CgGCGACaGCGGUGGCGGUgGc -3'
miRNA:   3'- aUGCCaG-CGCUGgUGCCAUUGCCAgC- -5'
11659 3' -56 NC_003102.1 + 32404 0.72 0.616528
Target:  5'- gACGGcUGCGGCUGCGGcggcAACGGUUGa -3'
miRNA:   3'- aUGCCaGCGCUGGUGCCa---UUGCCAGC- -5'
11659 3' -56 NC_003102.1 + 103087 0.72 0.616528
Target:  5'- uUugGGUCGCGuCCGCGGUcauguccacGAUGGgacCGa -3'
miRNA:   3'- -AugCCAGCGCuGGUGCCA---------UUGCCa--GC- -5'
11659 3' -56 NC_003102.1 + 59511 0.72 0.616528
Target:  5'- aGCGGcgaCGCGACgGCGGcAACGGUUc -3'
miRNA:   3'- aUGCCa--GCGCUGgUGCCaUUGCCAGc -5'
11659 3' -56 NC_003102.1 + 103242 0.72 0.602313
Target:  5'- cGCGGaCGCGACCcaaacgucgaaucUGGUGGCGGUCc -3'
miRNA:   3'- aUGCCaGCGCUGGu------------GCCAUUGCCAGc -5'
11659 3' -56 NC_003102.1 + 16452 0.73 0.57604
Target:  5'- cGCaGUCGCGGCgGCGGUccAACaGGUCa -3'
miRNA:   3'- aUGcCAGCGCUGgUGCCA--UUG-CCAGc -5'
11659 3' -56 NC_003102.1 + 134373 0.73 0.526355
Target:  5'- aGCGG-CgGCGGCgGCGGcGGCGGUCGc -3'
miRNA:   3'- aUGCCaG-CGCUGgUGCCaUUGCCAGC- -5'
11659 3' -56 NC_003102.1 + 15089 0.81 0.198545
Target:  5'- -uCGGUCGCGaACCgGCGGUAaaACGGUCGa -3'
miRNA:   3'- auGCCAGCGC-UGG-UGCCAU--UGCCAGC- -5'
11659 3' -56 NC_003102.1 + 32608 1.06 0.004727
Target:  5'- cUACGGUCGCGACCACGGUAACGGUCGc -3'
miRNA:   3'- -AUGCCAGCGCUGGUGCCAUUGCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.