miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11659 5' -59.1 NC_003102.1 + 32573 0.96 0.009631
Target:  5'- uCUCAACCGUUGCCGCC-CAGCCGCAGc -3'
miRNA:   3'- -GAGUUGGCAACGGCGGcGUCGGCGUC- -5'
11659 5' -59.1 NC_003102.1 + 46027 0.84 0.069704
Target:  5'- aUCGACCGUaGCCGCCGCcGCCGCu- -3'
miRNA:   3'- gAGUUGGCAaCGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 72540 0.8 0.140992
Target:  5'- --gAAUCGUUGCCGCCGCcGCCGCu- -3'
miRNA:   3'- gagUUGGCAACGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 59339 0.79 0.156061
Target:  5'- uCUCcggAACCGUUGCCGCCGUcGCCGUc- -3'
miRNA:   3'- -GAG---UUGGCAACGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 80717 0.77 0.205236
Target:  5'- -cCGAUCGUUGCUGCCGCuGCUGCu- -3'
miRNA:   3'- gaGUUGGCAACGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 134537 0.76 0.226215
Target:  5'- -gCGACCGccGCCGCCGCcGCCGCc- -3'
miRNA:   3'- gaGUUGGCaaCGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 37710 0.74 0.300156
Target:  5'- aUCAucACCGccGCCGCCGCcGCCGCc- -3'
miRNA:   3'- gAGU--UGGCaaCGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 49157 0.74 0.328647
Target:  5'- aCUCcauuACCGaUGCCGCCGCcGCUGCu- -3'
miRNA:   3'- -GAGu---UGGCaACGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 133729 0.73 0.351296
Target:  5'- gUUGAUCGggGCCGCguCGCAGCCGCc- -3'
miRNA:   3'- gAGUUGGCaaCGGCG--GCGUCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 33268 0.73 0.366999
Target:  5'- -aCAacGCCGUgcagucGCCGCCGCcGCCGaCAGg -3'
miRNA:   3'- gaGU--UGGCAa-----CGGCGGCGuCGGC-GUC- -5'
11659 5' -59.1 NC_003102.1 + 35949 0.72 0.383179
Target:  5'- aCUCGAUC----CCGCCGCAGCCGCu- -3'
miRNA:   3'- -GAGUUGGcaacGGCGGCGUCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 71479 0.72 0.408321
Target:  5'- gUCAccGCCGUUGCCGCCuCuGUCGCu- -3'
miRNA:   3'- gAGU--UGGCAACGGCGGcGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 17901 0.71 0.45243
Target:  5'- -gCAccGCCGccGCCGCCGCcGCCGCc- -3'
miRNA:   3'- gaGU--UGGCaaCGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 66922 0.7 0.499013
Target:  5'- gUCGucgUCGUcGCCGCCGCAGUCGUc- -3'
miRNA:   3'- gAGUu--GGCAaCGGCGGCGUCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 48845 0.7 0.518241
Target:  5'- uUCGccGCCGUcGCCGCCGCcgcGUCGCu- -3'
miRNA:   3'- gAGU--UGGCAaCGGCGGCGu--CGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 128948 0.69 0.56748
Target:  5'- gUCGGCCGccGCCGCUaccccgccgGCAGCUGCc- -3'
miRNA:   3'- gAGUUGGCaaCGGCGG---------CGUCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 6704 0.69 0.577484
Target:  5'- ---uGCCGauggUGCCGCUGCcGCCGguGu -3'
miRNA:   3'- gaguUGGCa---ACGGCGGCGuCGGCguC- -5'
11659 5' -59.1 NC_003102.1 + 78115 0.68 0.614781
Target:  5'- aUCAgGCCGUgaugaacgugucgaUGCUGCCGC--CCGCAGa -3'
miRNA:   3'- gAGU-UGGCA--------------ACGGCGGCGucGGCGUC- -5'
11659 5' -59.1 NC_003102.1 + 60362 0.68 0.617818
Target:  5'- aUC-GCCGccGCCGCCGCcGCUGCc- -3'
miRNA:   3'- gAGuUGGCaaCGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 16436 0.68 0.648202
Target:  5'- aUC-GCCGcgauuCUGCCGCAGUCGCGGc -3'
miRNA:   3'- gAGuUGGCaac--GGCGGCGUCGGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.