miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11659 5' -59.1 NC_003102.1 + 3736 0.67 0.708409
Target:  5'- aUCGGCgGUgGCUGCUGCuGCUGCu- -3'
miRNA:   3'- gAGUUGgCAaCGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 6704 0.69 0.577484
Target:  5'- ---uGCCGauggUGCCGCUGCcGCCGguGu -3'
miRNA:   3'- gaguUGGCa---ACGGCGGCGuCGGCguC- -5'
11659 5' -59.1 NC_003102.1 + 16436 0.68 0.648202
Target:  5'- aUC-GCCGcgauuCUGCCGCAGUCGCGGc -3'
miRNA:   3'- gAGuUGGCaac--GGCGGCGUCGGCGUC- -5'
11659 5' -59.1 NC_003102.1 + 16620 0.67 0.688501
Target:  5'- uUUGACCuGUUggaccGCCGCCGCGaCUGCGGa -3'
miRNA:   3'- gAGUUGG-CAA-----CGGCGGCGUcGGCGUC- -5'
11659 5' -59.1 NC_003102.1 + 17901 0.71 0.45243
Target:  5'- -gCAccGCCGccGCCGCCGCcGCCGCc- -3'
miRNA:   3'- gaGU--UGGCaaCGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 20627 0.67 0.668409
Target:  5'- -cCAACuCGUcGUCGUCGUAGUCGCGa -3'
miRNA:   3'- gaGUUG-GCAaCGGCGGCGUCGGCGUc -5'
11659 5' -59.1 NC_003102.1 + 32573 0.96 0.009631
Target:  5'- uCUCAACCGUUGCCGCC-CAGCCGCAGc -3'
miRNA:   3'- -GAGUUGGCAACGGCGGcGUCGGCGUC- -5'
11659 5' -59.1 NC_003102.1 + 33268 0.73 0.366999
Target:  5'- -aCAacGCCGUgcagucGCCGCCGCcGCCGaCAGg -3'
miRNA:   3'- gaGU--UGGCAa-----CGGCGGCGuCGGC-GUC- -5'
11659 5' -59.1 NC_003102.1 + 34968 0.68 0.65225
Target:  5'- gCUCAAUUGUUGuCCGagaguguaaugauccUCGUAGCCGCGu -3'
miRNA:   3'- -GAGUUGGCAAC-GGC---------------GGCGUCGGCGUc -5'
11659 5' -59.1 NC_003102.1 + 35949 0.72 0.383179
Target:  5'- aCUCGAUC----CCGCCGCAGCCGCu- -3'
miRNA:   3'- -GAGUUGGcaacGGCGGCGUCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 37710 0.74 0.300156
Target:  5'- aUCAucACCGccGCCGCCGCcGCCGCc- -3'
miRNA:   3'- gAGU--UGGCaaCGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 45006 0.66 0.728063
Target:  5'- -aCAGCCGcUUGCC-UUGCAGCUGUAu -3'
miRNA:   3'- gaGUUGGC-AACGGcGGCGUCGGCGUc -5'
11659 5' -59.1 NC_003102.1 + 46027 0.84 0.069704
Target:  5'- aUCGACCGUaGCCGCCGCcGCCGCu- -3'
miRNA:   3'- gAGUUGGCAaCGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 48845 0.7 0.518241
Target:  5'- uUCGccGCCGUcGCCGCCGCcgcGUCGCu- -3'
miRNA:   3'- gAGU--UGGCAaCGGCGGCGu--CGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 49157 0.74 0.328647
Target:  5'- aCUCcauuACCGaUGCCGCCGCcGCUGCu- -3'
miRNA:   3'- -GAGu---UGGCaACGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 50496 0.66 0.756914
Target:  5'- --aGACCGUUGUCGuuGCaaacGGUCGCu- -3'
miRNA:   3'- gagUUGGCAACGGCggCG----UCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 58657 0.67 0.688501
Target:  5'- gUCGA-CGUcGCCGUCGCAGUCgGCAu -3'
miRNA:   3'- gAGUUgGCAaCGGCGGCGUCGG-CGUc -5'
11659 5' -59.1 NC_003102.1 + 59339 0.79 0.156061
Target:  5'- uCUCcggAACCGUUGCCGCCGUcGCCGUc- -3'
miRNA:   3'- -GAG---UUGGCAACGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 60362 0.68 0.617818
Target:  5'- aUC-GCCGccGCCGCCGCcGCUGCc- -3'
miRNA:   3'- gAGuUGGCaaCGGCGGCGuCGGCGuc -5'
11659 5' -59.1 NC_003102.1 + 63242 0.66 0.756914
Target:  5'- uCUgGACCG-UGCCGCCGCcgAGaUCGUg- -3'
miRNA:   3'- -GAgUUGGCaACGGCGGCG--UC-GGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.