miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1166 5' -45.6 NC_001132.2 + 16377 0.66 0.999997
Target:  5'- -aUAAACCACauGACcGACGACGUGUg -3'
miRNA:   3'- ccAUUUGGUGccUUGcUUGUUGCAUA- -5'
1166 5' -45.6 NC_001132.2 + 98064 0.66 0.999992
Target:  5'- uGGUAacGACCGcCGGAGuuccauGCAGCGUGUc -3'
miRNA:   3'- -CCAU--UUGGU-GCCUUgcu---UGUUGCAUA- -5'
1166 5' -45.6 NC_001132.2 + 143106 0.67 0.999983
Target:  5'- uGGUuuguuGCCACGGcuAACGuGACAcACGUGUc -3'
miRNA:   3'- -CCAuu---UGGUGCC--UUGC-UUGU-UGCAUA- -5'
1166 5' -45.6 NC_001132.2 + 89037 0.67 0.999943
Target:  5'- --cAAACCcacGCGGGACGAGucguUGACGUGUa -3'
miRNA:   3'- ccaUUUGG---UGCCUUGCUU----GUUGCAUA- -5'
1166 5' -45.6 NC_001132.2 + 12686 0.67 0.999943
Target:  5'- cGUAGACgACGuagacGACGAugACAACGUAUa -3'
miRNA:   3'- cCAUUUGgUGCc----UUGCU--UGUUGCAUA- -5'
1166 5' -45.6 NC_001132.2 + 147386 0.67 0.999938
Target:  5'- -uUGAACUugGGAAaCGAgagauguacguaucGCAACGUGg -3'
miRNA:   3'- ccAUUUGGugCCUU-GCU--------------UGUUGCAUa -5'
1166 5' -45.6 NC_001132.2 + 93888 0.68 0.9999
Target:  5'- --cAAACUagaaACGGAagAUGAACAACGUAc -3'
miRNA:   3'- ccaUUUGG----UGCCU--UGCUUGUUGCAUa -5'
1166 5' -45.6 NC_001132.2 + 141240 0.69 0.999781
Target:  5'- -uUAAACgGUGGAACGGAUAACGUu- -3'
miRNA:   3'- ccAUUUGgUGCCUUGCUUGUUGCAua -5'
1166 5' -45.6 NC_001132.2 + 35869 0.69 0.999552
Target:  5'- ----cACCACGGAcgcgaaggccACGGugAACGUAUu -3'
miRNA:   3'- ccauuUGGUGCCU----------UGCUugUUGCAUA- -5'
1166 5' -45.6 NC_001132.2 + 2161 0.75 0.965319
Target:  5'- cGGaauACUACGGAACGAGCGGCa--- -3'
miRNA:   3'- -CCauuUGGUGCCUUGCUUGUUGcaua -5'
1166 5' -45.6 NC_001132.2 + 134694 1.09 0.036415
Target:  5'- uGGUAAACCACGGAACGAACAACGUAUc -3'
miRNA:   3'- -CCAUUUGGUGCCUUGCUUGUUGCAUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.