miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11660 3' -47.5 NC_003102.1 + 39182 0.66 0.999511
Target:  5'- gAGGCGUUUgUGUUuuuGAGACAGGCGu- -3'
miRNA:   3'- -UUUGCAAGgGCAGu--CUCUGUUUGUug -5'
11660 3' -47.5 NC_003102.1 + 37755 0.67 0.998586
Target:  5'- cAAACGguuUCCCGUC-GAGAuCAAACu-- -3'
miRNA:   3'- -UUUGCa--AGGGCAGuCUCU-GUUUGuug -5'
11660 3' -47.5 NC_003102.1 + 65335 0.67 0.998283
Target:  5'- uGACGU--UCGUUAGAGACuuuugAAACAGCa -3'
miRNA:   3'- uUUGCAagGGCAGUCUCUG-----UUUGUUG- -5'
11660 3' -47.5 NC_003102.1 + 22477 0.67 0.998283
Target:  5'- cGAAuCGauaCCGUUAGAGAuCAGGCAACu -3'
miRNA:   3'- -UUU-GCaagGGCAGUCUCU-GUUUGUUG- -5'
11660 3' -47.5 NC_003102.1 + 134910 0.67 0.998283
Target:  5'- cGACGgucgcaUCCuCGUCgagcAGAGACGAACAcaGCa -3'
miRNA:   3'- uUUGCa-----AGG-GCAG----UCUCUGUUUGU--UG- -5'
11660 3' -47.5 NC_003102.1 + 92100 0.68 0.997031
Target:  5'- cGGCGgcgCCggCGUCGGAGGCGAACu-- -3'
miRNA:   3'- uUUGCaa-GG--GCAGUCUCUGUUUGuug -5'
11660 3' -47.5 NC_003102.1 + 96972 0.71 0.975556
Target:  5'- cGGCGUUCCaCGcguacaUCGGAGACAGuugcuCGACg -3'
miRNA:   3'- uUUGCAAGG-GC------AGUCUCUGUUu----GUUG- -5'
11660 3' -47.5 NC_003102.1 + 87267 0.72 0.966361
Target:  5'- -cACGUucggcUCCCGUCAGAGccggaauauaaGCGuACAACg -3'
miRNA:   3'- uuUGCA-----AGGGCAGUCUC-----------UGUuUGUUG- -5'
11660 3' -47.5 NC_003102.1 + 71910 0.73 0.936059
Target:  5'- cAGCGUggUCgCCGUCGGcGACAagGACAGCg -3'
miRNA:   3'- uUUGCA--AG-GGCAGUCuCUGU--UUGUUG- -5'
11660 3' -47.5 NC_003102.1 + 33290 1.09 0.015237
Target:  5'- gAAACGUUCCCGUCAGAGACAAACAACg -3'
miRNA:   3'- -UUUGCAAGGGCAGUCUCUGUUUGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.