miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11660 5' -62 NC_003102.1 + 31625 0.66 0.601865
Target:  5'- -aGCUGCUGUCugGCCGGCGGGuaCGAUa -3'
miRNA:   3'- agCGGCGGCGG--CGGCUGUCCuaGCUA- -5'
11660 5' -62 NC_003102.1 + 71904 0.66 0.621626
Target:  5'- -gGUCGCCGUCGgCGACAaGGAcagCGGc -3'
miRNA:   3'- agCGGCGGCGGCgGCUGU-CCUa--GCUa -5'
11660 5' -62 NC_003102.1 + 46016 0.66 0.631521
Target:  5'- cCGCCGCCGCCGCUGcCucuucuAUCGc- -3'
miRNA:   3'- aGCGGCGGCGGCGGCuGucc---UAGCua -5'
11660 5' -62 NC_003102.1 + 14950 0.66 0.641416
Target:  5'- cCGCUGCCGCCGCuCGAagacuuGGuuUCGu- -3'
miRNA:   3'- aGCGGCGGCGGCG-GCUgu----CCu-AGCua -5'
11660 5' -62 NC_003102.1 + 1733 0.66 0.641416
Target:  5'- uUCGaUCGgUGgCuCCGGCAGGAUCGAUg -3'
miRNA:   3'- -AGC-GGCgGCgGcGGCUGUCCUAGCUA- -5'
11660 5' -62 NC_003102.1 + 38756 0.66 0.638448
Target:  5'- gUCGUCGUCGCCGCCGcuuuugaccacaucACAGcc-CGAUu -3'
miRNA:   3'- -AGCGGCGGCGGCGGC--------------UGUCcuaGCUA- -5'
11660 5' -62 NC_003102.1 + 91191 0.66 0.621626
Target:  5'- aCGCgGCCGCCGCU--CAGaaucgucucGAUCGAg -3'
miRNA:   3'- aGCGgCGGCGGCGGcuGUC---------CUAGCUa -5'
11660 5' -62 NC_003102.1 + 51590 0.66 0.611738
Target:  5'- uUUGUCGCCGCCGuuGuCGG--UCGAa -3'
miRNA:   3'- -AGCGGCGGCGGCggCuGUCcuAGCUa -5'
11660 5' -62 NC_003102.1 + 119316 0.66 0.611738
Target:  5'- gUCuCCGuuGCCGUCGACAGcGAuguaUUGAUu -3'
miRNA:   3'- -AGcGGCggCGGCGGCUGUC-CU----AGCUA- -5'
11660 5' -62 NC_003102.1 + 41323 0.67 0.562645
Target:  5'- cUCGCCGCCGCUaaugGCCGucgucaAUAGGuacgugCGAUu -3'
miRNA:   3'- -AGCGGCGGCGG----CGGC------UGUCCua----GCUA- -5'
11660 5' -62 NC_003102.1 + 129123 0.67 0.582188
Target:  5'- -aGCgGCaGCUGCCGGCGGGGUagCGGc -3'
miRNA:   3'- agCGgCGgCGGCGGCUGUCCUA--GCUa -5'
11660 5' -62 NC_003102.1 + 92974 0.67 0.562645
Target:  5'- aCGCCGCCGCCGauaccgucuUUGACGcGGuUUGAUg -3'
miRNA:   3'- aGCGGCGGCGGC---------GGCUGU-CCuAGCUA- -5'
11660 5' -62 NC_003102.1 + 19561 0.67 0.530815
Target:  5'- cUCGCCGCCGaCGCCGAuguCAuuacguaccgaaacGcGAUCGAUc -3'
miRNA:   3'- -AGCGGCGGCgGCGGCU---GU--------------C-CUAGCUA- -5'
11660 5' -62 NC_003102.1 + 1665 0.67 0.533683
Target:  5'- -gGCgGCgGCgguaaaauuugUGUCGGCAGGAUCGAUg -3'
miRNA:   3'- agCGgCGgCG-----------GCGGCUGUCCUAGCUA- -5'
11660 5' -62 NC_003102.1 + 111425 0.67 0.582188
Target:  5'- aCGCCGCCGCCGCCGcCu-------- -3'
miRNA:   3'- aGCGGCGGCGGCGGCuGuccuagcua -5'
11660 5' -62 NC_003102.1 + 128953 0.67 0.562645
Target:  5'- cCGCCGCCGCuacccCGCCGGCAGc------ -3'
miRNA:   3'- aGCGGCGGCG-----GCGGCUGUCcuagcua -5'
11660 5' -62 NC_003102.1 + 6712 0.67 0.552939
Target:  5'- gUGCCGCUGCCGCCGGuguuGGcgCu-- -3'
miRNA:   3'- aGCGGCGGCGGCGGCUgu--CCuaGcua -5'
11660 5' -62 NC_003102.1 + 59350 0.68 0.477525
Target:  5'- gUUGCCGCCGUCGCCGuCGccgcUCGAa -3'
miRNA:   3'- -AGCGGCGGCGGCGGCuGUccu-AGCUa -5'
11660 5' -62 NC_003102.1 + 134947 0.68 0.505269
Target:  5'- cCGUCGCCGCucaacacgccgaCGCCGGCGGGcagcaCGAc -3'
miRNA:   3'- aGCGGCGGCG------------GCGGCUGUCCua---GCUa -5'
11660 5' -62 NC_003102.1 + 95881 0.68 0.524144
Target:  5'- aCGgUGCCGCCGCCGaACAGauGGUUGu- -3'
miRNA:   3'- aGCgGCGGCGGCGGC-UGUC--CUAGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.