miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11660 5' -62 NC_003102.1 + 33255 1.05 0.001445
Target:  5'- gUCGCCGCCGCCGCCGACAGGAUCGAUc -3'
miRNA:   3'- -AGCGGCGGCGGCGGCUGUCCUAGCUA- -5'
11660 5' -62 NC_003102.1 + 89883 0.87 0.028244
Target:  5'- cCGCCGCCGCCGCCaGACAGGAugucaUCGGg -3'
miRNA:   3'- aGCGGCGGCGGCGG-CUGUCCU-----AGCUa -5'
11660 5' -62 NC_003102.1 + 17883 0.77 0.149561
Target:  5'- cCGCCGCCGCCGCCGcCuucuauucucaccgaAGGcgCGGUg -3'
miRNA:   3'- aGCGGCGGCGGCGGCuG---------------UCCuaGCUA- -5'
11660 5' -62 NC_003102.1 + 46609 0.75 0.189204
Target:  5'- gUCGUCGUCGCCGCCGACguucccGGGcuccucGUCGAa -3'
miRNA:   3'- -AGCGGCGGCGGCGGCUG------UCC------UAGCUa -5'
11660 5' -62 NC_003102.1 + 87600 0.74 0.223685
Target:  5'- cCaCCGCCGUCGCCGACGucGAUCGAUc -3'
miRNA:   3'- aGcGGCGGCGGCGGCUGUc-CUAGCUA- -5'
11660 5' -62 NC_003102.1 + 134527 0.72 0.282048
Target:  5'- cCGCCGCCGCCGCCGcuacACAuuGGcacCGAa -3'
miRNA:   3'- aGCGGCGGCGGCGGC----UGU--CCua-GCUa -5'
11660 5' -62 NC_003102.1 + 37723 0.72 0.282048
Target:  5'- cCGCCGCCGCCGCCcgaaGACuuGGUCu-- -3'
miRNA:   3'- aGCGGCGGCGGCGG----CUGucCUAGcua -5'
11660 5' -62 NC_003102.1 + 92253 0.71 0.325379
Target:  5'- aCGCCGgCGCCGCCGucaccuaaauauggaACuguaucGGGAUCGGUu -3'
miRNA:   3'- aGCGGCgGCGGCGGC---------------UG------UCCUAGCUA- -5'
11660 5' -62 NC_003102.1 + 2119 0.71 0.351848
Target:  5'- aCGCCGCCGUCuCCGGuuGGuAUCGAa -3'
miRNA:   3'- aGCGGCGGCGGcGGCUguCC-UAGCUa -5'
11660 5' -62 NC_003102.1 + 78602 0.7 0.378216
Target:  5'- gUCGCCGUCGUCGCCGccgucaucuuguacCAGGAUacgCGAUc -3'
miRNA:   3'- -AGCGGCGGCGGCGGCu-------------GUCCUA---GCUA- -5'
11660 5' -62 NC_003102.1 + 22924 0.7 0.383004
Target:  5'- gCGUCGCCGCCGCCGAauuGAacaagaaaaucuUCGAg -3'
miRNA:   3'- aGCGGCGGCGGCGGCUgucCU------------AGCUa -5'
11660 5' -62 NC_003102.1 + 66919 0.7 0.383004
Target:  5'- gUCGUCGUCGCCGCCG-CAGucgucaucGUCGGUc -3'
miRNA:   3'- -AGCGGCGGCGGCGGCuGUCc-------UAGCUA- -5'
11660 5' -62 NC_003102.1 + 48845 0.7 0.407545
Target:  5'- uUCGCCGCCGUCGCCGccGCcGcGUCGc- -3'
miRNA:   3'- -AGCGGCGGCGGCGGC--UGuCcUAGCua -5'
11660 5' -62 NC_003102.1 + 60362 0.7 0.407545
Target:  5'- aUCGCCGCCGCCGCCGcCGc------- -3'
miRNA:   3'- -AGCGGCGGCGGCGGCuGUccuagcua -5'
11660 5' -62 NC_003102.1 + 21290 0.69 0.424442
Target:  5'- cUCGCgCaUCGCCGCCGACc-GAUCGAg -3'
miRNA:   3'- -AGCG-GcGGCGGCGGCUGucCUAGCUa -5'
11660 5' -62 NC_003102.1 + 59350 0.68 0.477525
Target:  5'- gUUGCCGCCGUCGCCGuCGccgcUCGAa -3'
miRNA:   3'- -AGCGGCGGCGGCGGCuGUccu-AGCUa -5'
11660 5' -62 NC_003102.1 + 134947 0.68 0.505269
Target:  5'- cCGUCGCCGCucaacacgccgaCGCCGGCGGGcagcaCGAc -3'
miRNA:   3'- aGCGGCGGCG------------GCGGCUGUCCua---GCUa -5'
11660 5' -62 NC_003102.1 + 95881 0.68 0.524144
Target:  5'- aCGgUGCCGCCGCCGaACAGauGGUUGu- -3'
miRNA:   3'- aGCgGCGGCGGCGGC-UGUC--CUAGCua -5'
11660 5' -62 NC_003102.1 + 19561 0.67 0.530815
Target:  5'- cUCGCCGCCGaCGCCGAuguCAuuacguaccgaaacGcGAUCGAUc -3'
miRNA:   3'- -AGCGGCGGCgGCGGCU---GU--------------C-CUAGCUA- -5'
11660 5' -62 NC_003102.1 + 1665 0.67 0.533683
Target:  5'- -gGCgGCgGCgguaaaauuugUGUCGGCAGGAUCGAUg -3'
miRNA:   3'- agCGgCGgCG-----------GCGGCUGUCCUAGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.