Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11660 | 5' | -62 | NC_003102.1 | + | 1665 | 0.67 | 0.533683 |
Target: 5'- -gGCgGCgGCgguaaaauuugUGUCGGCAGGAUCGAUg -3' miRNA: 3'- agCGgCGgCG-----------GCGGCUGUCCUAGCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 1733 | 0.66 | 0.641416 |
Target: 5'- uUCGaUCGgUGgCuCCGGCAGGAUCGAUg -3' miRNA: 3'- -AGC-GGCgGCgGcGGCUGUCCUAGCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 2119 | 0.71 | 0.351848 |
Target: 5'- aCGCCGCCGUCuCCGGuuGGuAUCGAa -3' miRNA: 3'- aGCGGCGGCGGcGGCUguCC-UAGCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 6712 | 0.67 | 0.552939 |
Target: 5'- gUGCCGCUGCCGCCGGuguuGGcgCu-- -3' miRNA: 3'- aGCGGCGGCGGCGGCUgu--CCuaGcua -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 14950 | 0.66 | 0.641416 |
Target: 5'- cCGCUGCCGCCGCuCGAagacuuGGuuUCGu- -3' miRNA: 3'- aGCGGCGGCGGCG-GCUgu----CCu-AGCua -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 17883 | 0.77 | 0.149561 |
Target: 5'- cCGCCGCCGCCGCCGcCuucuauucucaccgaAGGcgCGGUg -3' miRNA: 3'- aGCGGCGGCGGCGGCuG---------------UCCuaGCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 19561 | 0.67 | 0.530815 |
Target: 5'- cUCGCCGCCGaCGCCGAuguCAuuacguaccgaaacGcGAUCGAUc -3' miRNA: 3'- -AGCGGCGGCgGCGGCU---GU--------------C-CUAGCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 21290 | 0.69 | 0.424442 |
Target: 5'- cUCGCgCaUCGCCGCCGACc-GAUCGAg -3' miRNA: 3'- -AGCG-GcGGCGGCGGCUGucCUAGCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 22924 | 0.7 | 0.383004 |
Target: 5'- gCGUCGCCGCCGCCGAauuGAacaagaaaaucuUCGAg -3' miRNA: 3'- aGCGGCGGCGGCGGCUgucCU------------AGCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 31625 | 0.66 | 0.601865 |
Target: 5'- -aGCUGCUGUCugGCCGGCGGGuaCGAUa -3' miRNA: 3'- agCGGCGGCGG--CGGCUGUCCuaGCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 33255 | 1.05 | 0.001445 |
Target: 5'- gUCGCCGCCGCCGCCGACAGGAUCGAUc -3' miRNA: 3'- -AGCGGCGGCGGCGGCUGUCCUAGCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 37723 | 0.72 | 0.282048 |
Target: 5'- cCGCCGCCGCCGCCcgaaGACuuGGUCu-- -3' miRNA: 3'- aGCGGCGGCGGCGG----CUGucCUAGcua -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 38756 | 0.66 | 0.638448 |
Target: 5'- gUCGUCGUCGCCGCCGcuuuugaccacaucACAGcc-CGAUu -3' miRNA: 3'- -AGCGGCGGCGGCGGC--------------UGUCcuaGCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 41323 | 0.67 | 0.562645 |
Target: 5'- cUCGCCGCCGCUaaugGCCGucgucaAUAGGuacgugCGAUu -3' miRNA: 3'- -AGCGGCGGCGG----CGGC------UGUCCua----GCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 46016 | 0.66 | 0.631521 |
Target: 5'- cCGCCGCCGCCGCUGcCucuucuAUCGc- -3' miRNA: 3'- aGCGGCGGCGGCGGCuGucc---UAGCua -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 46609 | 0.75 | 0.189204 |
Target: 5'- gUCGUCGUCGCCGCCGACguucccGGGcuccucGUCGAa -3' miRNA: 3'- -AGCGGCGGCGGCGGCUG------UCC------UAGCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 48845 | 0.7 | 0.407545 |
Target: 5'- uUCGCCGCCGUCGCCGccGCcGcGUCGc- -3' miRNA: 3'- -AGCGGCGGCGGCGGC--UGuCcUAGCua -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 51590 | 0.66 | 0.611738 |
Target: 5'- uUUGUCGCCGCCGuuGuCGG--UCGAa -3' miRNA: 3'- -AGCGGCGGCGGCggCuGUCcuAGCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 59350 | 0.68 | 0.477525 |
Target: 5'- gUUGCCGCCGUCGCCGuCGccgcUCGAa -3' miRNA: 3'- -AGCGGCGGCGGCGGCuGUccu-AGCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 60362 | 0.7 | 0.407545 |
Target: 5'- aUCGCCGCCGCCGCCGcCGc------- -3' miRNA: 3'- -AGCGGCGGCGGCGGCuGUccuagcua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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