Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11660 | 5' | -62 | NC_003102.1 | + | 21290 | 0.69 | 0.424442 |
Target: 5'- cUCGCgCaUCGCCGCCGACc-GAUCGAg -3' miRNA: 3'- -AGCG-GcGGCGGCGGCUGucCUAGCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 60362 | 0.7 | 0.407545 |
Target: 5'- aUCGCCGCCGCCGCCGcCGc------- -3' miRNA: 3'- -AGCGGCGGCGGCGGCuGUccuagcua -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 48845 | 0.7 | 0.407545 |
Target: 5'- uUCGCCGCCGUCGCCGccGCcGcGUCGc- -3' miRNA: 3'- -AGCGGCGGCGGCGGC--UGuCcUAGCua -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 66919 | 0.7 | 0.383004 |
Target: 5'- gUCGUCGUCGCCGCCG-CAGucgucaucGUCGGUc -3' miRNA: 3'- -AGCGGCGGCGGCGGCuGUCc-------UAGCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 22924 | 0.7 | 0.383004 |
Target: 5'- gCGUCGCCGCCGCCGAauuGAacaagaaaaucuUCGAg -3' miRNA: 3'- aGCGGCGGCGGCGGCUgucCU------------AGCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 78602 | 0.7 | 0.378216 |
Target: 5'- gUCGCCGUCGUCGCCGccgucaucuuguacCAGGAUacgCGAUc -3' miRNA: 3'- -AGCGGCGGCGGCGGCu-------------GUCCUA---GCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 2119 | 0.71 | 0.351848 |
Target: 5'- aCGCCGCCGUCuCCGGuuGGuAUCGAa -3' miRNA: 3'- aGCGGCGGCGGcGGCUguCC-UAGCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 92253 | 0.71 | 0.325379 |
Target: 5'- aCGCCGgCGCCGCCGucaccuaaauauggaACuguaucGGGAUCGGUu -3' miRNA: 3'- aGCGGCgGCGGCGGC---------------UG------UCCUAGCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 37723 | 0.72 | 0.282048 |
Target: 5'- cCGCCGCCGCCGCCcgaaGACuuGGUCu-- -3' miRNA: 3'- aGCGGCGGCGGCGG----CUGucCUAGcua -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 134527 | 0.72 | 0.282048 |
Target: 5'- cCGCCGCCGCCGCCGcuacACAuuGGcacCGAa -3' miRNA: 3'- aGCGGCGGCGGCGGC----UGU--CCua-GCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 87600 | 0.74 | 0.223685 |
Target: 5'- cCaCCGCCGUCGCCGACGucGAUCGAUc -3' miRNA: 3'- aGcGGCGGCGGCGGCUGUc-CUAGCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 46609 | 0.75 | 0.189204 |
Target: 5'- gUCGUCGUCGCCGCCGACguucccGGGcuccucGUCGAa -3' miRNA: 3'- -AGCGGCGGCGGCGGCUG------UCC------UAGCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 17883 | 0.77 | 0.149561 |
Target: 5'- cCGCCGCCGCCGCCGcCuucuauucucaccgaAGGcgCGGUg -3' miRNA: 3'- aGCGGCGGCGGCGGCuG---------------UCCuaGCUA- -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 89883 | 0.87 | 0.028244 |
Target: 5'- cCGCCGCCGCCGCCaGACAGGAugucaUCGGg -3' miRNA: 3'- aGCGGCGGCGGCGG-CUGUCCU-----AGCUa -5' |
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11660 | 5' | -62 | NC_003102.1 | + | 33255 | 1.05 | 0.001445 |
Target: 5'- gUCGCCGCCGCCGCCGACAGGAUCGAUc -3' miRNA: 3'- -AGCGGCGGCGGCGGCUGUCCUAGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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