miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11661 3' -54 NC_003102.1 + 35056 1.09 0.004535
Target:  5'- cAGCGACAACGUCGCCGUCGACGAUGAg -3'
miRNA:   3'- -UCGCUGUUGCAGCGGCAGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 110193 0.83 0.209599
Target:  5'- uGCGACAGCGgacaCGCCGUCGAC-AUGAu -3'
miRNA:   3'- uCGCUGUUGCa---GCGGCAGCUGcUACU- -5'
11661 3' -54 NC_003102.1 + 71913 0.83 0.225717
Target:  5'- gAGCaGCGugGUCGCCGUCGGCGAc-- -3'
miRNA:   3'- -UCGcUGUugCAGCGGCAGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 122885 0.76 0.513526
Target:  5'- uGCGuauGCGACGcUUGCCGUUGACGGUGc -3'
miRNA:   3'- uCGC---UGUUGC-AGCGGCAGCUGCUACu -5'
11661 3' -54 NC_003102.1 + 38912 0.75 0.533295
Target:  5'- aAGCGGCGGCGaCGaCGaCGACGAUGAc -3'
miRNA:   3'- -UCGCUGUUGCaGCgGCaGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 18468 0.75 0.583773
Target:  5'- gAGCGAuCAggucACGgcucugcagggCGCCGUCGACGAUGu -3'
miRNA:   3'- -UCGCU-GU----UGCa----------GCGGCAGCUGCUACu -5'
11661 3' -54 NC_003102.1 + 48560 0.74 0.624824
Target:  5'- uGU-ACGACGUCGCCGUC-ACGAUGc -3'
miRNA:   3'- uCGcUGUUGCAGCGGCAGcUGCUACu -5'
11661 3' -54 NC_003102.1 + 131157 0.73 0.686396
Target:  5'- cAGCGGC-ACGUagCGCCGUCGGC--UGAg -3'
miRNA:   3'- -UCGCUGuUGCA--GCGGCAGCUGcuACU- -5'
11661 3' -54 NC_003102.1 + 85175 0.72 0.710672
Target:  5'- uGCGugGACGcUCcaauugugauaguuuGCCGUCGuCGAUGAu -3'
miRNA:   3'- uCGCugUUGC-AG---------------CGGCAGCuGCUACU- -5'
11661 3' -54 NC_003102.1 + 37875 0.72 0.726648
Target:  5'- gGGCGGCGGCGgcggCGgCGgUGAUGAUGAc -3'
miRNA:   3'- -UCGCUGUUGCa---GCgGCaGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 58812 0.72 0.736528
Target:  5'- uGCGACGGCGaCGUCGaCGACGAc-- -3'
miRNA:   3'- uCGCUGUUGCaGCGGCaGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 17737 0.72 0.736528
Target:  5'- cGGCGGCGGCGgCGgCGgCGGCGGUGc -3'
miRNA:   3'- -UCGCUGUUGCaGCgGCaGCUGCUACu -5'
11661 3' -54 NC_003102.1 + 114990 0.72 0.746316
Target:  5'- cGGCGACAGCgGUgGCgGU-GGCGGUGGu -3'
miRNA:   3'- -UCGCUGUUG-CAgCGgCAgCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 111878 0.71 0.775036
Target:  5'- --aGAC-AUGUCGCCGcUGACGAUGGc -3'
miRNA:   3'- ucgCUGuUGCAGCGGCaGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 112985 0.71 0.775036
Target:  5'- --aGAgAACGUCGUCGUCGucgugGCGGUGGu -3'
miRNA:   3'- ucgCUgUUGCAGCGGCAGC-----UGCUACU- -5'
11661 3' -54 NC_003102.1 + 134384 0.71 0.785288
Target:  5'- cGGCGGCGGCGgucgcaagaauuuggCGCCGcCGGCGGa-- -3'
miRNA:   3'- -UCGCUGUUGCa--------------GCGGCaGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 15691 0.7 0.820197
Target:  5'- uGCGGCaAACGUCGCgaCGcCGACGAg-- -3'
miRNA:   3'- uCGCUG-UUGCAGCG--GCaGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 128887 0.7 0.820197
Target:  5'- uGGUGAUggUGUCGUCGgc-ACGAUGAa -3'
miRNA:   3'- -UCGCUGuuGCAGCGGCagcUGCUACU- -5'
11661 3' -54 NC_003102.1 + 75854 0.7 0.820197
Target:  5'- cGGUGACGGCGcCGCCGauuUCGAgCGuauUGAa -3'
miRNA:   3'- -UCGCUGUUGCaGCGGC---AGCU-GCu--ACU- -5'
11661 3' -54 NC_003102.1 + 58644 0.7 0.828745
Target:  5'- aAGCGGugucgucguCGACGUCGCCGUCGcaguCGGc-- -3'
miRNA:   3'- -UCGCU---------GUUGCAGCGGCAGCu---GCUacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.