miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11661 3' -54 NC_003102.1 + 3970 0.66 0.958256
Target:  5'- cGCGACGuaucgaACGUCGCagaGguaUCGACGAa-- -3'
miRNA:   3'- uCGCUGU------UGCAGCGg--C---AGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 6671 0.68 0.909354
Target:  5'- uGGCGuuGGCGUUGCCGcUGGCGuugcUGAu -3'
miRNA:   3'- -UCGCugUUGCAGCGGCaGCUGCu---ACU- -5'
11661 3' -54 NC_003102.1 + 15691 0.7 0.820197
Target:  5'- uGCGGCaAACGUCGCgaCGcCGACGAg-- -3'
miRNA:   3'- uCGCUG-UUGCAGCG--GCaGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 15860 0.67 0.936797
Target:  5'- cGCGACu-CGUCGgCGUCG-CGAc-- -3'
miRNA:   3'- uCGCUGuuGCAGCgGCAGCuGCUacu -5'
11661 3' -54 NC_003102.1 + 15905 0.66 0.954431
Target:  5'- uAGUgGACAuguuCGUgGCCGauUCGAUGGUGGc -3'
miRNA:   3'- -UCG-CUGUu---GCAgCGGC--AGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 17737 0.72 0.736528
Target:  5'- cGGCGGCGGCGgCGgCGgCGGCGGUGc -3'
miRNA:   3'- -UCGCUGUUGCaGCgGCaGCUGCUACu -5'
11661 3' -54 NC_003102.1 + 18308 0.7 0.845289
Target:  5'- cGcCGACGAaccUGcCGCCGUCG-CGAUGGa -3'
miRNA:   3'- uC-GCUGUU---GCaGCGGCAGCuGCUACU- -5'
11661 3' -54 NC_003102.1 + 18466 0.69 0.883109
Target:  5'- cGGCGGCAGguuCGUCGgCGUCGGCc---- -3'
miRNA:   3'- -UCGCUGUU---GCAGCgGCAGCUGcuacu -5'
11661 3' -54 NC_003102.1 + 18468 0.75 0.583773
Target:  5'- gAGCGAuCAggucACGgcucugcagggCGCCGUCGACGAUGu -3'
miRNA:   3'- -UCGCU-GU----UGCa----------GCGGCAGCUGCUACu -5'
11661 3' -54 NC_003102.1 + 22930 0.66 0.965232
Target:  5'- -aCGAaAGCGUCGCCGcCGcCGAauUGAa -3'
miRNA:   3'- ucGCUgUUGCAGCGGCaGCuGCU--ACU- -5'
11661 3' -54 NC_003102.1 + 31371 0.67 0.931792
Target:  5'- -uCGACAcUGUCGgacgguucaaCGUCGACGGUGAu -3'
miRNA:   3'- ucGCUGUuGCAGCg---------GCAGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 33111 0.68 0.909354
Target:  5'- cGGCGuuACGGCGcUGCCGU--GCGAUGAa -3'
miRNA:   3'- -UCGC--UGUUGCaGCGGCAgcUGCUACU- -5'
11661 3' -54 NC_003102.1 + 35056 1.09 0.004535
Target:  5'- cAGCGACAACGUCGCCGUCGACGAUGAg -3'
miRNA:   3'- -UCGCUGUUGCAGCGGCAGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 37875 0.72 0.726648
Target:  5'- gGGCGGCGGCGgcggCGgCGgUGAUGAUGAc -3'
miRNA:   3'- -UCGCUGUUGCa---GCgGCaGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 38912 0.75 0.533295
Target:  5'- aAGCGGCGGCGaCGaCGaCGACGAUGAc -3'
miRNA:   3'- -UCGCUGUUGCaGCgGCaGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 39159 0.67 0.931792
Target:  5'- -cCGACAAgG-CGCCGUUGACGuccGAg -3'
miRNA:   3'- ucGCUGUUgCaGCGGCAGCUGCua-CU- -5'
11661 3' -54 NC_003102.1 + 41474 0.66 0.952837
Target:  5'- uAGCGGCGGCGaggacaagauucgCGUCGUCGACu---- -3'
miRNA:   3'- -UCGCUGUUGCa------------GCGGCAGCUGcuacu -5'
11661 3' -54 NC_003102.1 + 45864 0.67 0.936797
Target:  5'- cAGCGGCGGCGgcgGCUacgGUCGAUGAUu- -3'
miRNA:   3'- -UCGCUGUUGCag-CGG---CAGCUGCUAcu -5'
11661 3' -54 NC_003102.1 + 46160 0.69 0.868619
Target:  5'- -aCGGCAAUGUCGuuGauggcggCGGCGGUGGu -3'
miRNA:   3'- ucGCUGUUGCAGCggCa------GCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 48560 0.74 0.624824
Target:  5'- uGU-ACGACGUCGCCGUC-ACGAUGc -3'
miRNA:   3'- uCGcUGUUGCAGCGGCAGcUGCUACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.