Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11661 | 3' | -54 | NC_003102.1 | + | 63909 | 0.68 | 0.896698 |
Target: 5'- cGCaGACAACgGUUGCCGcaaaGGCGAUGu -3' miRNA: 3'- uCG-CUGUUG-CAGCGGCag--CUGCUACu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 98218 | 0.7 | 0.837111 |
Target: 5'- aAGCaGACAGacaGcCGaCGUCGACGAUGGu -3' miRNA: 3'- -UCG-CUGUUg--CaGCgGCAGCUGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 81263 | 0.7 | 0.837111 |
Target: 5'- cGGCGACAACGgcaucgggaagaUCaCCGUUGGCGAgGGg -3' miRNA: 3'- -UCGCUGUUGC------------AGcGGCAGCUGCUaCU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 18308 | 0.7 | 0.845289 |
Target: 5'- cGcCGACGAaccUGcCGCCGUCG-CGAUGGa -3' miRNA: 3'- uC-GCUGUU---GCaGCGGCAGCuGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 81397 | 0.69 | 0.86105 |
Target: 5'- cGGCGACcGCGUCGaCuUCGACGAc-- -3' miRNA: 3'- -UCGCUGuUGCAGCgGcAGCUGCUacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 87437 | 0.69 | 0.868619 |
Target: 5'- -uCGAuCGACGUCGgCGaCGGCGGUGGc -3' miRNA: 3'- ucGCU-GUUGCAGCgGCaGCUGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 133868 | 0.69 | 0.882405 |
Target: 5'- cAGCGACGACGcggccgagcugcaUCGCCuuGcCGuCGGUGAg -3' miRNA: 3'- -UCGCUGUUGC-------------AGCGG--CaGCuGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 66766 | 0.69 | 0.883109 |
Target: 5'- cGGCGGCGACGaCGaCGaCGACGAuugUGAu -3' miRNA: 3'- -UCGCUGUUGCaGCgGCaGCUGCU---ACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 108646 | 0.68 | 0.896698 |
Target: 5'- uGGCGuCAuucugauCGUCGCCGUUGACa---- -3' miRNA: 3'- -UCGCuGUu------GCAGCGGCAGCUGcuacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 107876 | 0.7 | 0.828745 |
Target: 5'- cGGUGGaagagaAACGUUGCUGUCGuCGAUGc -3' miRNA: 3'- -UCGCUg-----UUGCAGCGGCAGCuGCUACu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 75700 | 0.7 | 0.828745 |
Target: 5'- cGGCGGCGcCGUCaCCGaCGACGAcGAc -3' miRNA: 3'- -UCGCUGUuGCAGcGGCaGCUGCUaCU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 58644 | 0.7 | 0.828745 |
Target: 5'- aAGCGGugucgucguCGACGUCGCCGUCGcaguCGGc-- -3' miRNA: 3'- -UCGCU---------GUUGCAGCGGCAGCu---GCUacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 18468 | 0.75 | 0.583773 |
Target: 5'- gAGCGAuCAggucACGgcucugcagggCGCCGUCGACGAUGu -3' miRNA: 3'- -UCGCU-GU----UGCa----------GCGGCAGCUGCUACu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 85175 | 0.72 | 0.710672 |
Target: 5'- uGCGugGACGcUCcaauugugauaguuuGCCGUCGuCGAUGAu -3' miRNA: 3'- uCGCugUUGC-AG---------------CGGCAGCuGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 17737 | 0.72 | 0.736528 |
Target: 5'- cGGCGGCGGCGgCGgCGgCGGCGGUGc -3' miRNA: 3'- -UCGCUGUUGCaGCgGCaGCUGCUACu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 114990 | 0.72 | 0.746316 |
Target: 5'- cGGCGACAGCgGUgGCgGU-GGCGGUGGu -3' miRNA: 3'- -UCGCUGUUG-CAgCGgCAgCUGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 112985 | 0.71 | 0.775036 |
Target: 5'- --aGAgAACGUCGUCGUCGucgugGCGGUGGu -3' miRNA: 3'- ucgCUgUUGCAGCGGCAGC-----UGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 134384 | 0.71 | 0.785288 |
Target: 5'- cGGCGGCGGCGgucgcaagaauuuggCGCCGcCGGCGGa-- -3' miRNA: 3'- -UCGCUGUUGCa--------------GCGGCaGCUGCUacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 128887 | 0.7 | 0.820197 |
Target: 5'- uGGUGAUggUGUCGUCGgc-ACGAUGAa -3' miRNA: 3'- -UCGCUGuuGCAGCGGCagcUGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 15691 | 0.7 | 0.820197 |
Target: 5'- uGCGGCaAACGUCGCgaCGcCGACGAg-- -3' miRNA: 3'- uCGCUG-UUGCAGCG--GCaGCUGCUacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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